interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF THE CHROMOSOME- PARTITIONING PROTEIN PARB COMPLEXED TO THE CENTROMERIC PARS SITE
(Chromosome-partitioning protein ParB)
referenceStevenson et al. 'Cell 32 107928 2020
sourceCaulobacter vibrioides NA1000
experimentX-ray (resolution=2.40, R-factor=0.217)
structural superfamilyKorB DNA-binding domain-like;
multimeric complexes6s6h_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureQSRSANRRVRE

Estimated binding specificities ?

readout + contactlogo
# IC=8.004 IC/col=1.001 n_of_columns=8 specificity:   
A |   9   0   0   0   9   0  69   0
C |   9   0   0   0  11  96   9  96
G |  11  96   0   0   9   0   9   0
T |  67   0  96  96  67   0   9   0
scan!

Dendrogram of similar interfaces ?

matrix format



home

updated Fri Sep 13 23:37:41 2024