6s6h_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF THE CHROMOSOME- PARTITIONING PROTEIN PARB COMPLEXED TO THE CENTROMERIC PARS SITE
reference	Stevenson et al. 'Cell 32 107928 2020
source	Caulobacter vibrioides NA1000
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	KorB DNA-binding domain-like;
reference complex	6s6h_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6s6h_A interface=38,48,49,50,53,54,57,80,102,103,106, mlavleigiienvqradlnvleealsykvlmekfertQeniaqtigkSRShvANtmRllalpdevqsylvsgeltaghaRaiaaaadpvalakqiiegglsVRetEalarkapkskggrpp > 6s6h_B interface=38,48,49,50,53,54,57,80,102,103,106, mlavleigiienvqradlnvleealsykvlmekfertQeniaqtigkSRShvANtmRllalpdevqsylvsgeltaghaRaiaaaadpvalakqiiegglsVRetEalarkapnlsagkskggrpprvkdklaaalehhh
interface signature	QSRSANRRVRE/QSRSANRRVRE

Estimated binding specificities ?

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# IC=18.072 IC/col=1.130 n_of_columns=16

specificity:

A |   6   0   0   0   6   0  96   0   0   6   0  78  96  96   0  78
C |   6   0   0   0   6  96   0  96   0   6   0   6   0   0  96   6
G |   6  96   0   0   6   0   0   0  96   6  96   6   0   0   0   6
T |  78   0  96  96  78   0   0   0   0  78   0   6   0   0   0   6

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updated Sat Dec 14 19:58:49 2024