3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

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updated Tue Jan 6 13:18:37 2026

structure name	CRYO-EM STRUCTURE OF THE FORK PROTECTION COMPLEX BOUND TO CMG AT A REPLICATION FORK - CONFORMATION 2 MCM CTD:SSDNA
experiment	NMR
structural superfamily	Nucleic acid-binding proteins;P-loop containing nucleoside triphosphate hydrolases;
reference complex	5bk4_2 5bk4_3 5bk4_5 5bk4_6 5bk4_7 5bk4_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6sko_2 interface=108, fswteeeerefrkisrdrgiidkiissmapsiyghrdiktavacslfggvpknvsirgdinvlllgdpgtaksqilkyvektahravfatgqgasavgltasvrkdeWtleggalvladkgvclidefdqdrtsiheameqqsisiskagivttlqarcsiiaaanpnggrynstlplaqnvsltepilsrfdilcvvrdlvdeeaderlatfvvdshvrshpenlqrqrkkeeeispipqellmkyihyartkiypklhqmdmdkvsrvyadlrresistpitvrhlesilriaesfakmrlsefvssydldraikvvvdsfvdaqkvsvrrqlrrsfaiytlgh > 6sko_3 interface= arqmltdfdirninklskkkdifdilsqslapsiyghdhikkaillmlmggveknlengshlrgdinilmvgdpstaksqllrfvlntaslaiattgrgssgvgltaAvttderrleagamvladrgvvcidefdkmtdvdrvaihevmeqqtvtiakagihttlnarcsviaaanpvfgqydvnrdphqnialpdsllsrfdllfvvtddineirdrsisehvlrthrylppgylegepvrpklvtipflrkyvqyakervipqltqeainvivknytdlrnddntkkspitartletlirlatahakvrlsktvnkvdakvaanllrfallged > 6sko_4 interface= qitdqdlakirevaaredlysllarsiapsiyeledvkkgillqlfggtnktftkggryrgdinillcgdpstsksqilqyvhkitprgvytsgkgssavgltayitRlvlesgalvlsdggvccidefdkmsdstrsvlhevmeqqtisiakagiittlnarssilasanpigsrynpnlpvtenidlpppllsrfdlvylvldkvdekndrelakhltnlyledkpdvlpvefltmyisyakehihpiiteaaktelvrayvgmrkmtattrqlesmirlaeahakmklknvveledvqeavrlirsaikdyatdpktgkidmnlvqt > 6sko_5 interface=101,102, mfteeeeeeflqlsrnpklyeiltnsiapsifgnedikkaivcllmggskkilpdgmrlrgdinvlllaksqllkfvekvspiavytsgkgaagltasvqRFyleggamvladggvvcidefdkmrdedrvaiheameqqtisiakagittvlnsrtsvlaaanttilsrfdmifivneerdisianhvinihtseisiekmkryitycrlkcaprlspqaaeklssnfvtirkqllinpitirqleaiiriteslaklelspiaqerhvdeairlfqas > 6sko_6 interface=113,119, dqevflnslssdeinelkemvkdehiydklvrsiapavfgheavkkgillqmlggvhkstvegiklrgdinicvvgdpstsksqflkyvvgfaprsvytsgkassaagltaaVvrdedYtieagalmladngiccidefdkmdisdqvaiheameqqtisiakagihatlnartsilaaanpvggrynrklslrgnlnmtapimsrfdlffvilddcnekidtelashivdlhmkrdeaieppfsaeqlrryikyartfkpiltkearsylvekykelrkddasyritvrqlesmirlseaiarancvdeitpsfiaeaydllrqsii > 6sko_7 interface=106, tsdveervmelitsgdvynrlaksiapeiygnldvkkalllllvggvdkrvgdgmkirgdinvclmgdpgvaksqllkaickisprgvyttgkgssgvgltaavmKdpvtdemileggalvladngiccidefdkmdesdrtaihevmeqqtisiskaginttlnartsilaaanplygrynprlspldninlpaallsrfdilflmldipsrdddeklaehvtyvhmhnkqpdftpvepskmreyiayaktkrpvmseavndyvvqayirlrqdskremdskfsfgqatprtllgiirlsqalaklrladmvdiddveealrlvrvskeslyqe