6u82_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE DOUBLE HOMEODOMAIN OF DUX4 IN COMPLEX WITH A DNA APTAMER CONTAINING BULGE AND LOOP (Double homeobox protein 4)
reference	Aihara et al. 'Faseb 34 4573 2020
source	Homo sapiens
experiment	X-ray (resolution=3.21, R-factor=0.253)
structural superfamily	Homeodomain-like;
sequence family	Homeobox domain;
reference complex	5zfz_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6u82_A interface=2,5,47,50,51,54,77,80,122,125,126,130, gRrrRlvwtpsqsealracfernpypgiatrerlaqaigipeprvqIwfQNerSrqlrqhrresrpwpgrrgppegRrkRtavtgsqtalllrafekdrfpgiaareelaretglpesriqIwfQNrraRhp
interface signature	RRIQNSRRIQNR

Estimated binding specificities ?

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# IC=11.184 IC/col=0.932 n_of_columns=12

specificity:

A |   0   0  81  11   0  69   0  62  24   0   0  96
C |  96  12   5   5   0  11   0  12  24   0  96   0
G |   0   0   5   5   0   5   0  11  24   0   0   0
T |   0  84   5  75  96  11  96  11  24  96   0   0

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updated Mon Dec 18 18:20:56 2023