6uph_D : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	STRUCTURE OF A YEAST CENTROMERIC NUCLEOSOME AT 2.7 ANGSTROM RESOLUTION
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	6uph_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6uph_D interface=5, rtkaRketyssyiykvlkqthpdtgisqksmsilnsfvndiferiatessklaaynkkstisareiqtavrlilpgelakhavsegtravtkysss

  
  RG----       +-----------------------------7ccr_H    
               ! 
  --RG--       !                                +8txv_G    
               !                        +-------2 
  --RG--       !                        !       +8upf_G    
               !             +----------4 
  --RARA       !             !          !       +6a5l_g    
             --9             !          +-------1 
  --RC--       !           +-5                  +7yqk_C    
               !           ! ! 
  --RT--       !           ! !                 +8u14_G    
               !        +--6 +-----------------3 
  --RG--       !        !  !                   +8rbx_V    
               !      +-7  ! 
  --RA--       !      ! !  +------------------7e9c_F    
               +------8 ! 
  --RC--              ! +---------------------7ux9_E    
                      ! 
  --RT--              +----------------------6px1_A

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updated Sat Jan 10 12:03:35 2026