interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF A YEAST CENTROMERIC NUCLEOSOME AT 2.7 ANGSTROM RESOLUTION
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6uph_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ------RA--       +-----------------------------6g0l_D    
                   !  
  RT--------       !                         +----9fgq_D    
                   !            +------------3 
  ----RG----       !            !            +----5x0y_G    
                   !      +-----6 
  ----RA----       !      !     !                 +1zla_C    
                 -10      !     ! +---------------1 
  ----RG----       !      !     +-5               +8ox0_C    
                   !      !       ! 
  ----RG----       !    +-8       +---------------8jla_C    
                   !    ! ! 
  ----RG----       !    ! !                       +8txv_G    
                   !    ! !  +--------------------2 
  ----RA--RA       +----9 +--7                    +6a5l_g    
                        !    ! 
  ----RT----            !    +--------------------8grq_A    
                        ! 
  ----RT----            !            +-----------8u14_G    
                        +------------4 
  --LCRT----                         +-----------8hr1_E    
                 

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updated Wed Dec 18 05:55:53 2024