3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

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updated Thu Jul 31 02:55:42 2025

structure name	STRUCTURE OF A YEAST CENTROMERIC NUCLEOSOME AT 2.7 ANGSTROM RESOLUTION
experiment	NMR
structural superfamily	Histone-fold;lambda repressor-like DNA-binding domains;p53-like transcription factors;Nucleic acid-binding proteins;P-loop containing nucleoside triphosphate hydrolases;
reference complex	5o9g_F 6ftx_B 6r8y_H 6uph_C 6uph_D 6x0n_f 7nkx_f 7on1_e 7u0g_M 7vdt_B 7xcr_F 7xzx_N 7xzz_N 8xgc_4
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6uph_A interface=21, elalyeirkyqrstdlliskIpfarlvkevtdefttkdqdlrwqsmaimalqeaseaylvgllehtnllalhakritimkkdmqlarrirgqf > 6uph_B interface=22, dniqgitkpairrlarrggvkRisgliyeevrnvlktflesvirdavtytehakrktvtsldvvyalkrqgrtlygfgg > 6uph_C interface= srsakagltfpvgrvhrllrkGnyaqrigsgapvyltavleylaaeilelagnaardnkktriiprhlqlairnddelnkllgnvtiaqggvlpnih > 6uph_D interface=5, rtkaRketyssyiykvlkqthpdtgisqksmsilnsfvndiferiatessklaaynkkstisareiqtavrlilpgelakhavsegtravtkysss > 6uph_E interface=45, tpselalyeirkyqrstdlliskipfarlvkevtdefttkdqdlRwqsmaimalqeaseaylvgllehtnllalhakritimkkdmqlarrirgqfi > 6uph_F interface= dniqgitkpairrlarrggvkrisgliyeevrnvlktflesvirDavtytehakrktvtsldvvyalkrqgrtlygfgg > 6uph_G interface= qsrsakagltfpvgrvhrllrkgnyaqrigsgapvyltavleylAaeilelagnaardnkktriiprhlqlairnddelnkllgnvtiaqggvlpnihq > 6uph_H interface=1, Rketyssyiykvlkqthpdtgisqksmsilnsfvndiferiatessklaaynkkstisareiqtavrlilpgelakhavsegtravtkysss