6vbw_BCDEFG : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF CASCADE-TNIQ-DSDNA TERNARY COMPLEX
source	VIBRIO CHOLERAE
experiment	NMR
reference complex	6vbw_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6vbw_B interface=45,69,70,71,227,232, mklptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeAaslaydvsgqpiksataealaqgNPHqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvelyetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvFteqnSrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggmfqh > 6vbw_C interface=6,40,69,70,71,229,232,335,337, mklptNlayersidpsdvcffvvwpddrktpltynsrtlLgqmeaaslaydvsgqpiksataealaqgNPHqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvelyetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvftEqnSrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggMfQhk > 6vbw_D interface=6,40,44,69,70,71,102,227,229,230,231,234,337,339, mklptNlayersidpsdvcffvvwpddrktpltynsrtlLgqmEaaslaydvsgqpiksataealaqgNPHqvdfchvpygashiecsfsvsfsselrqpyKcnsskvkqtlvqlvelyetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvFtEKTqnSrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggMfQhk > 6vbw_E interface=6,40,69,70,71,227,229,230,233,336, mklptNlayersidpsdvcffvvwpddrktpltynsrtlLgqmeaaslaydvsgqpiksataealaqgNPHqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvelyetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvFtETqnSrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggMfqhk > 6vbw_F interface=6,69,70,71,227,229,230,231,234,337,339, mklptNlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpiksataealaqgNPHqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvelyetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvFtEKTqnSrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggMfQhk > 6vbw_G interface=6,196,198,199,303,305, mklptNlayersidpsdvcffvvwpddrktpltynsrtlhqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvelyetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvFtEKsrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggMfQhk
interface signature	ANPHFS/NLNPHESMQ/NLENPHKFEKTSMQ/NLNPHFETSM/NNPHFEKTSMQ/NFEKMQ

Estimated binding specificities ?

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# IC=32.943 IC/col=0.998 n_of_columns=33

specificity:

A |   9   7   9   0  96  96  96  24   0   0  96  96   0  24  96  96   0   0   7  24  96  96   0   0   0  24  24   0   0   0   0  24  96
C |  73  75   7   0   0   0   0  24   0  96   0   0   0  24   0   0   0  96  73  24   0   0   0  96   0  24  24  96   0   0   0  24   0
G |   7   7   7  96   0   0   0  24  96   0   0   0   0  24   0   0  96   0   7  24   0   0  96   0  96  24  24   0   0  96   0  24   0
T |   7   7  73   0   0   0   0  24   0   0   0   0  96  24   0   0   0   0   9  24   0   0   0   0   0  24  24   0  96   0  96  24   0

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updated Sat Dec 14 21:46:12 2024