6w1a_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF STREPTOCOCCUS DYSGALACTIAE SHP PHEROMONE RECEPTOR RGG2 BOUND TO DNA
reference	Capodagli et al. Proc.Natl.Acad.Sci.USA 117 24494 2020
source	Streptococcus dysgalactiae
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	6w1a_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6w1a_A interface=27,28,29,30,32,33, kelgktlrrlrqgkqvsissladehlSKSQiSRfergeseiscsrllnlldklnitidefvsthskththfftllsrvrkyyaeknvakllklledyahkdyestmikailssieptvepseeevtrltdylfsveqwgyyeiillgncsrfinyntlflltkemvtsfayseqnktnktlvtqlsincliisidysyfdhshyliekiefllrdelnfyektvflyvhgyyklkqgqvsgkddmrqalqifkylgedalyysykehyrkevlg > 6w1a_B interface=26,28,29,31,32,35, elgktlrrlrqgkqvsissladehlSkSQiSRfeRgeseiscsrllnlldklnitidefvsthskththfftllsrvrkyyaeknvakllklledyahkdyestmikailssieptvepseeevtrltdylfsveqwgyyeiillgncsrfinyntlflltkemvtsfayseqnktnktlvtqlsincliisidysyfdhshyliekiefllrdelnfyektvflyvhgyyklkqgqvsgkddmrqalqifkylgedalyysykehyrkevlg
interface signature	SKSQSR/SSQSRR

Estimated binding specificities ?

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# IC=4.473 IC/col=0.373 n_of_columns=12

specificity:

A |  11  11   0  20  24  27  26  22  10   3  14   4
C |  13   7   2  17  25  23  25  25  13   5  10   6
G |  12  71   0  41  23  21  22  26  13  85  64  80
T |  60   7  94  18  24  25  23  23  60   3   8   6

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updated Sat Dec 14 22:31:29 2024