6w1f_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF STREPTOCOCCUS THERMOPHILUS SHP PHEROMONE RECEPTOR RGG3 BOUND TO DNA
reference	Capodagli et al. Proc.Natl.Acad.Sci.USA 117 24494 2020
source	Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) / Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) / Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) / Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	6w1f_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6w1f_A interface=18,26,27,28,29,31,32, klgstlrkvrngkqisiCsvadehlSKSQiSRfergeseiscirlinildklhitldeflilhdedytktesfanlvqyirkqyslqninniqsllsdssnytldpfektmvksilhtmdssiipsddellqladylfkvekwgyyeiillgncvrtidynsvflltkemlnnyiysslnktnkrivtqlainclilsidmeeftncfylideikalldnelnfyeqtvflyatgyfefkrwqstsgiekmkqaiqvldilgednlklhytihfdklinn > 6w1f_B interface=18,26,28,29,31,32,38, klgstlrkvrngkqisiCsvadehlSkSQiSRfergeSeiscirlinildklhitldeflilhdedytktesfanlvqyirkqyslqninniqsllsdssnytldpfektmvksilhtmdssiipsddellqladylfkvekwgyyeiillgncvrtidynsvflltkemlnnyiysslnktnkrivtqlainclilsidmeeftncfylideikalldnelnfyeqtvflyatgyfefkrwqstsgiekmkqaiqvldilgednlklhytihfdklinn
interface signature	CSKSQSR/CSSQSRS

Estimated binding specificities ?

contact

# IC=9.815 IC/col=0.701 n_of_columns=14

specificity:

A |   5   7   0   0  96  24  24  24  24   0   0   7  81  62
C |   5  67  96  96   0  24  24  24  24  96  96  84   5  11
G |   7  11   0   0   0  24  24  24  24   0   0   5   5  11
T |  79  11   0   0   0  24  24  24  24   0   0   0   5  12

scan!

home
updated Tue Jan 6 15:40:39 2026