6w1f_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF STREPTOCOCCUS THERMOPHILUS SHP PHEROMONE RECEPTOR RGG3 BOUND TO DNA (Positive transcriptional regulator MutR family)
reference	Capodagli et al. Proc.Natl.Acad.Sci.USA 117 24494 2020
source	Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) / Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)
experiment	X-ray (resolution=3.20, R-factor=0.222)
structural superfamily	lambda repressor-like DNA-binding domains;
multimeric complexes	6w1f_AB
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6w1f_A interface=18,26,27,28,29,31,32, klgstlrkvrngkqisiCsvadehlSKSQiSRfergeseiscirlinildklhitldeflilhdedytktesfanlvqyirkqyslqninniqsllsdssnytldpfektmvksilhtmdssiipsddellqladylfkvekwgyyeiillgncvrtidynsvflltkemlnnyiysslnktnkrivtqlainclilsidmeeftncfylideikalldnelnfyeqtvflyatgyfefkrwqstsgiekmkqaiqvldilgednlklhytihfdklinn
interface signature	CSKSQSR

Estimated binding specificities ?

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# IC=4.475 IC/col=0.895 n_of_columns=5

specificity:

A |  13  13   0   0  96
C |  13  54  96  96   0
G |  13  13   0   0   0
T |  57  16   0   0   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  --CTSGKTSGQTSTRC------   L                          +6w1f_A    
                                             +--------2 
  ----SGKGSCQTSTRG------   L          +------4        +6w1a_A    
                                      !      ! 
  ----HCQASTETSARG----VT   L   +------5      +---------3u3w_B    
                               !      ! 
  ------------ITRG------   L   !      +----------------5jub_B    
                             --6 
  ----STNTVTATSTQTRTETTT   L   !                        +2r1j_L    
                               !                      +-1 
  AT--ATTTPTTTNT--------   L   +----------------------3 +6fix_D    
                                                      ! 
  ----AAKGSGYGST--RTQG--   L                          +3zkc_A

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updated Wed Dec 18 06:25:42 2024