interface graph thumbnail
legend  pdf

structure nameWHEAT DWARF VIRUS REP DOMAIN COMPLEXED WITH A SINGLE-STRANDED DNA 8- MER COMPRISING THE CLEAVAGE SITE
referencePornschloegl et al. 'Nucleic 49 1046 2021
sourceWheat dwarf virus
experimentX-ray (resolution=2.61, R-factor=?)
structural superfamilyOrigin of replication-binding domain, RBD-like;
reference complex6we1_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTPHNQ/FPHNIQ

Estimated binding specificities ?

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# IC=3.242 IC/col=0.811 n_of_columns=4 specificity:   
A |  96  18  96  70
C |   0  18   0  10
G |   0  18   0   8
T |   0  42   0   8
scan!

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updated Tue Jan 6 15:53:49 2026