6wig_AB : 3D-footprint complex

structure name	STRUCTURE OF STENOFOLIA PROTEIN HD DOMAIN BOUND WITH DNA
reference	Pathak et al. 'Acta 77 1050 2021
source	MEDICAGO TRUNCATULA
experiment	X-ray (resolution=2.10, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	6wig_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6wig_A interface=8,55,58,59,62,63, aavvvssRwnptpeqlraleelyrrgtrtpsaeqiqqitaqlrkfgkiegknvfYwfQNhkARerqkrrrqmesaaaefdsaie > 6wig_B interface=5,52,55,56,60, vvssRwnptpeqlraleelyrrgtrtpsaeqiqqitaqlrkfgkiegknvfYwfQNhkaRerqkrrrq
interface signature	RYQNAR/RYQNR

Estimated binding specificities ?

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# IC=12.418 IC/col=0.955 n_of_columns=13

specificity:

A |   4   0   0  96  66   4  96  24  76   0   0  96   8
C |   4   0   0   0   4  75   0  24   8   0  96   0  15
G |   4   0  96   0  13   4   0  24   8   0   0   0   4
T |  84  96   0   0  13  13   0  24   4  96   0   0  69

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updated Sat Dec 14 23:12:35 2024