6wig_AB : 3D-footprint complex

structure name	STRUCTURE OF STENOFOLIA PROTEIN HD DOMAIN BOUND WITH DNA
reference	Pathak et al. 'Acta 77 1050 2021
source	MEDICAGO TRUNCATULA
experiment	X-ray (resolution=2.10, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	6wig_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6wig_A interface=8,55,58,59,62,63, aavvvssRwnptpeqlraleelyrrgtrtpsaeqiqqitaqlrkfgkiegknvfYwfQNhkARerqkrrrqmesaaaefdsaie > 6wig_B interface=5,52,55,56,60, vvssRwnptpeqlraleelyrrgtrtpsaeqiqqitaqlrkfgkiegknvfYwfQNhkaRerqkrrrq
interface signature	RYQNAR/RYQNR

Estimated binding specificities ?

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# IC=13.942 IC/col=0.697 n_of_columns=20

specificity:

A |   0  27  24  24  24  24  24  63   0   0  96  13  24   0  16   8   0   0  96  87
C |  96   2  24  24  24  24  24  13   0   0   0  13  24   0   2   9   0  96   0   4
G |   0  60  24  24  24  24  24  12   0  96   0  10  24   0  74   8   0   0   0   5
T |   0   7  24  24  24  24  24   8  96   0   0  60  24  96   4  71  96   0   0   0

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updated Tue Sep 10 23:23:02 2024