interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF STENOFOLIA PROTEIN HD DOMAIN BOUND WITH DNA
(STENOFOLIA)
referencePathak et al. 'Acta 77 1050 2021
sourceMEDICAGO TRUNCATULA
experimentX-ray (resolution=2.10, R-factor=0.200)
structural superfamilyHomeodomain-like;
sequence familyHomeobox domain;
multimeric complexes6wig_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRYQNAR

Estimated binding specificities ?

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# IC=6.244 IC/col=0.892 n_of_columns=7 specificity:   
A |   7   0   0  96  66   7  81
C |   7   0   0   0   7  66   7
G |   9   0  96   0  14   7   8
T |  73  96   0   0   9  16   0
scan!

Dendrogram of similar interfaces ?

matrix format
  
  --RT----QTVAQTNA------   L                                 +8osb_E    
                                             +---------------1 
  RART------VTKGNA--KA--   L             +---2               +2lkx_A    
                                         !   ! 
  ----------NCICNARGRG--   L         +---3   +---------------4xrm_B    
                                     !   ! 
  --RT------IAQCNAMG----   L   +-----4   +-------------------1b72_A    
                               !     ! 
  --RC------IAQCNAYC----   L --5     +-----------------------3rkq_B    
                               ! 
  ----RCKG----TTTCATDCKG   L   +-----------------------------4ix7_B

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updated Wed Dec 18 06:34:38 2024