6wig_A : 3D-footprint complex

structure name	STRUCTURE OF STENOFOLIA PROTEIN HD DOMAIN BOUND WITH DNA (STENOFOLIA)
reference	Pathak et al. 'Acta 77 1050 2021
source	MEDICAGO TRUNCATULA
experiment	X-ray (resolution=2.10, R-factor=0.200)
structural superfamily	Homeodomain-like;
sequence family	Homeobox domain;
multimeric complexes	6wig_AB
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6wig_A interface=8,55,58,59,62,63, aavvvssRwnptpeqlraleelyrrgtrtpsaeqiqqitaqlrkfgkiegknvfYwfQNhkARerqkrrrqmesaaaefdsaie
interface signature	RYQNAR

Estimated binding specificities ?

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# IC=8.553 IC/col=0.428 n_of_columns=20

specificity:

A |   0  28  24  24  24  24  24  24  24  24  24  24  24   5  16  11   0   0  96  90
C |  96  13  24  24  24  24  24  24  24  24  24  24  24   0  13  18   0  96   0   5
G |   0  50  24  24  24  24  24  24  24  24  24  24  24   5  67   5   0   0   0   0
T |   0   5  24  24  24  24  24  24  24  24  24  24  24  86   0  62  96   0   0   1

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Dendrogram of similar interfaces ?

matrix format

  
  --RT----QTVAQTNA------   L                                 +8osb_E    
                                             +---------------1 
  RART------VTKGNA--KA--   L            +----3               +2lkx_A    
                                        !    ! 
  ----------NCICNARGRG--   L   +--------4    +---------------4xrm_B    
                               !        ! 
  --RT------IAQCNAMG----   L   !        !               +----1b72_A    
                             --5        +---------------2 
  --RC------IAQCNAYC----   L   !                        +----3rkq_B    
                               ! 
  ----RCKG----TTTCATDCKG   L   +-----------------------------4ix7_B

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updated Sat Sep 14 00:27:13 2024