| structure name | STRUCTURE OF STENOFOLIA PROTEIN HD DOMAIN BOUND WITH DNA (STENOFOLIA) |
| reference | Pathak et al. 'Acta 77 1050 2021 |
| source | MEDICAGO TRUNCATULA |
| experiment | X-ray (resolution=2.10, R-factor=0.200) |
| structural superfamily | Homeodomain-like; |
| sequence family | Homeobox domain; |
| multimeric complexes | 6wig_AB |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RYQNAR |
Estimated binding specificities ?
| readout + contact |  |
A | 7 0 0 96 66 7 82 C | 7 0 0 0 7 68 7 G | 9 0 96 0 16 7 7 T | 73 96 0 0 7 14 0scan! |
Dendrogram of similar interfaces ?
matrix format------RA----------------YAQTNAAARG------ L +------6wig_A +------9 ------RA----------------IAQTNA---------- L ! +------5ego_B +--11 ------RC----------------IAQCNAYC-------- L ! ! +---3rkq_B ! +---------8 ----------------------RTVAITNAMCRG------ L +-15 +---1yrn_A ! ! --RT--------------------NCICNARGRG------ L ! ! +---------------6fqp_B ! +-13 ------RA----------------IA--NA---------- +-16 ! +4xrs_G ! ! +---------------2 ----RC----RT------------NCSTNARG-------- L ! ! +1mnm_C ! ! ------------------RTQT--ITQANAVTKTKT---- L +-17 ! +--2ld5_A ! ! +----------------6 ------RT----------------VAQTNA---------- L ! ! +--5hod_A ! ! ------RA----------------ITQTNAMG-------- L +-19 ! +5zjt_E ! ! +---------------------1 --RA--RT----------------VTKGNA--KA------ L ! ! +2lkx_A ! ! ------RT----------------VASGNA---------- L ! +----------------------3cmy_A ! ------RA----------------IAQTNAMC-------- L ! +-------1puf_A ! ! ------RT--------------KTIAQCNA----RT---- L +-20 +-----10 +1ig7_A ! ! ! ! +-3 ------RT----------------NT--NA------ITRG L ! ! ! +------4 +5zjt_B ! ! +-12 ! ------------------------IA--NA---------- ! ! ! ! +4qtr_D ! ! +---14 ! --RG--------RA--------KAITQTNAMC-------- L ! ! ! ! +--------------1ahd_P +-21 ! ! ! --------HTRT------------NCSTNARG-------- L ! ! +-18 +-----------------1k61_B ! ! ! ----YART----------------VTQTNAMTKTRT---- L ! ! ! +-1jgg_B ! ! +--------------------5 TTAT----------NT--TCTA------------------ L +-22 ! +-5zux_A ! ! ! ------RA--------------KGSAQAKT---------- L ! ! ! +---7d3t_D ! ! +----------------------7 ------RT--------RCET----SAQAKT---------- L +-23 ! +---6qec_A ! ! ! ------RT--------STVTMCKGDCRGTA---------- L ! ! +---------------------------1iv6_A -24 ! ------RT----------VT--KGDCRGTA---------- L ! +---------------------------7c4p_A ! ----------------RGKG--SGSAQAVCRT-------- L +----------------------------5gzb_A |
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updated Tue Dec 19 15:51:33 2023