6xg8_AB : 3D-footprint complex

structure name	ISCTH4 TRANSPOSASE, PRE-CLEAVED COMPLEX, PCC
reference	Kosek et al. 'Embo 40 e105666 2021
experiment	X-ray (resolution=3.50, R-factor=?)
structural superfamily	Ribonuclease H-like;
reference complex	6xg8_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6xg8_A interface=54,64,66,69,86,88,100,102,121,122,137,138,139,142,357,358,360, iitpekkelirnliseynitsakdlqealkdllgdtiqnmleaeldehlgyekYesteeaksnYrNgyTsktlkssvgqveidipRdRnaefepkivprYkRdiseienkiiamyargmsTReineqiqeiygfevSAEmvSkitdkilpeieewqkrplgevypivfidaihfsvkndgivgkkavyivlaidiegqkdvigiyvgenesskfwlsvlndlknrgvkdililcadalsgikdainaafpnteyqrcivhqirntlkyvsdkdrkefardlkriytapnekagydqmlevsekwekkypaamkswksnwdvicpffkyseelrkimyttntieslnssyrrinksrTVfPgdqsllksiylatvkitskwtmryknwglilgqlqimfegr > 6xg8_B interface=216,219,224,225,228,293, kriitpekkelirnliseynitsakdlqealkdllgdtiqnmleaeldehlgdiseienkiiamyargmstreineqiqeiygfevsaemvskitdkilpeieewqkrplgevypivfidaihfsvkndgivgkkavyivlaidiegqkdvigiyvgenesskfwlsvlndlknrgvkdililcadalsgikdainaafpnteyqrcivhqirntLkyVsdkdRKefArdlkriytapnekagydqmlevsekwekkypaamkswksnwdvicpffkyseelrkimyttntiEslnssyrrinksrtvfpgdqsllksiylatvkitskwtmryknwglilgqlqimfegr
interface signature	YYNTRRYRTRSAESTVP/LVRKAE

Estimated binding specificities ?

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# IC=17.722 IC/col=0.709 n_of_columns=25

specificity:

A |  23  24  24  24   0  11   0   0  96  86  76  24  24  24  24   0  24   0   0   0   0   8  96  80  80
C |   0  24  24  24   0   9   0   0   0   4   8  24  24  24  24   1  24   0   0   0   0  12   0   3   3
G |  73  24  24  24  96   9  96   0   0   3   6  24  24  24  24  89  24   0  96   0  96  12   0   9   6
T |   0  24  24  24   0  67   0  96   0   3   6  24  24  24  24   6  24  96   0  96   0  64   0   4   7

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updated Sun Dec 15 00:23:22 2024