6ycq_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF ARABIDOPSIS THALIANA AUXIN RESPONSE FACTOR 1 (ATARF1) IN COMPLEX WITH HIGH AFFINITY DNA
reference	Weijers et al. Proc.Natl.Acad.Sci.USA 117 24557 2020
source	Arabidopsis thaliana
experiment	X-ray (resolution=1.65, R-factor=?)
structural superfamily	DNA-binding pseudobarrel domain;
reference complex	6ycq_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6ycq_A interface=123,128,173,176,178, gkpggvlsdalcrelwhacagplvtlpregervyyfpeghmeqleasmhqgleqqmpsfnlpskilckviniqrraepetdevyaqitllpeldqseptspdapvqepekctvhsfcktltaSdtstHggfsvlrrhaddclppldmsqqppwqelvatdlhnsewhfrhifRgqPrRhllttgwsvfvsskklvagdafiflrgeneelrvgvrrhmrqqtnipssvisshsmhigvlataahaittgtifsvfykprtsrsefivsvnryleaktqklsvgmrfkmrfegeeapekrfsgtivgvqenkssvwhdsewrslkvqwdepssvfrpervspwelepl > 6ycq_B interface=119,124,169,172,174, gvlsdalcrelwhacagplvtlpregervyyfpeghmeqleasmhqgleqqmpsfnlpskilckviniqrraepetdevyaqitllpeldqseptspdapvqepekctvhsfcktltaSdtstHggfsvlrrhaddclppldmsqqppwqelvatdlhnsewhfrhifRgqPrRhllttgwsvfvsskklvagdafiflrgeneelrvgvrrhmrqqtnipssvisshsmhigvlataahaittgtifsvfykprtsrsefivsvnryleaktqklsvgmrfkmrfegeeapekrfsgtivgvqenkssvwhdsewrslkvqwdepssvfrpervspwelepl
interface signature	SHRPR/SHRPR

Estimated binding specificities ?

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# IC=15.893 IC/col=0.795 n_of_columns=20

specificity:

A |   0   0   0  10   0   0   5   3  24  24  24  24  24  69   3   0   0  67   0  96
C |   0   0   0  12  96   0   3  87  24  24  24  24  24   3  81  96   0  10  96   0
G |   0   0  96   7   0  96  81   3  24  24  24  24  24  14   9   0  96  12   0   0
T |  96  96   0  67   0   0   7   3  24  24  24  24  24  10   3   0   0   7   0   0

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updated Wed Sep 11 01:15:05 2024