6zix_AB : 3D-footprint complex

structure name	STRUCTURE OF RCSB FROM SALMONELLA ENTERICA SEROVAR TYPHIMURIUM BOUND TO PROMOTER P1FLHDC IN THE PRESENCE OF PHOSPHOMIMETIC BEF3-
reference	Marina et al. 'Nucleic 49 2357 2021
experiment	X-ray (resolution=3.40, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6zix_A interface=173,174,175,177,178,179, nnmnviiaddhpivlfgirksleqiewvnvvgefedstalinnlpkldahvlitdlsmpgdkygdgitlikyikrhfpslsiivltmnnnpailsavldldiegivlkqgaptdlpkalaalqkgesvsrllekisaggygdkrlspkesevlrlfaegflvteiakklnrsIKTiSSQkksammklgvendiallnylssv > 6zix_B interface=175,176,177,179,180,181, nnmnviiaddhpivlfgirksleqiewvnvvgefedstalinnlpkldahvlitdlsmpgdkygdgitlikyikrhfpslsiivltmnnnpailsavldldiegivlkqgaptdlpkalaalqkgkkftpesvsrllekisagdkrlspkesevlrlfaegflvteiakklnrsIKTiSSQkksammklgvendiallnylssvt
interface signature	IKTSSQ/IKTSSQ

Estimated binding specificities ?

readout + contact

# IC=11.055 IC/col=0.790 n_of_columns=14

specificity:

A |   6  84   3   3  96  84  24  24  24   3   3   0   0  87
C |   3   3   6   3   0   3  24  24  24   6  84   0   0   3
G |   3   3  84  87   0   6  24  24  24   3   6   0   0   3
T |  84   6   3   3   0   3  24  24  24  84   3  96  96   3

scan!

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updated Sun Dec 15 01:40:39 2024