6zj2_AB : 3D-footprint complex

structure name	STRUCTURE OF RCSB FROM SALMONELLA ENTERICA SEROVAR TYPHIMURIUM BOUND TO PROMOTER RPRA IN THE PRESENCE OF PHOSPHOMIMETIC BEF3-
reference	Marina et al. 'Nucleic 49 2357 2021
experiment	X-ray (resolution=3.38, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6zj2_A interface=174,175,177,178, nnmnviiaddhpivlfgirksleqiewvnvvgefedstalinnlpkldahvlitdlsmpgdkygdgitlikyikrhfpslsiivltmnnnpailsavldldiegivlkqgaptdlpkalaalqkpesvsrllekisaggygdkrlspkesevlrlfaegflvteiakklnrsiKTiSSqkksammklgvendiallnylssv > 6zj2_B interface=178,179,180,182,183, nnmnviiaddhpivlfgirksleqiewvnvvgefedstalinnlpkldahvlitdlsmpgdkygdgitlikyikrhfpslsiivltmnnnpailsavldldiegivlkqgaptdlpkalaalqkgkkftpesvsrllekisaggygdkrlspkesevlrlfaegflvteiakklnrsIKTiSSqkksammklgvendiallnylssvt
interface signature	KTSS/IKTSS

Estimated binding specificities ?

readout + contact

# IC=6.674 IC/col=0.556 n_of_columns=12

specificity:

A |   0  12  64   8  68  24  24  24  24   0   0   8
C |   0  44   0  16  12  24  24  24  24   0  96   0
G |   0  16  32  60   8  24  24  24  24   0   0   0
T |  96  24   0  12   8  24  24  24  24  96   0  88

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updated Sun Dec 15 01:40:57 2024