7b25_ABCD : 3D-footprint complex

structure name	DTXR-LIKE IRON-DEPENDENT REGULATOR IDER (Q43A VARIANT) COMPLEXED WITH COBALT AND ITS CONSENSUS DNA-BINDING SEQUENCE
reference	Marcos-Torres et al.
experiment	X-ray (resolution=2.34, R-factor=?)
structural superfamily	Iron-dependent repressor protein, dimerization domain;C-terminal domain of transcriptional repressors;"Winged helix" DNA-binding domain;
reference complex	7b24_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7b25_A interface=35,37,38,40,45, dlidttemylrtiydleeegvvplrariaerleqSgPTvSatvaRmerdglltvaedrhleltkagraraisvmrkhrlaerllvdvigleweqvhleacrwehvmseaverklvkllgnpttspygnpipgldelgv > 7b25_B interface=35,37,38,40,45,58, dlidttemylrtiydleeegvvplrariaerleqSgPTvSatvaRmerdglltvaedRhleltkagraraisvmrkhrlaerllvdvigleweqvhleacrwehvmseaverklvkllgnpttspygnpipgldelgvsvepvdtdlrrvdevarsgggralvcriaehvqldpdlmselkkvgvvpgneidivavagvnkpiqvqgseggtqlqpgiahavmvrvk > 7b25_C interface=35,37,38,40,45, dlidttemylrtiydleeegvvplrariaerleqSgPTvSatvaRmerdglltvaedrhleltkagraraisvmrkhrlaerllvdvigleweqvhleacrwehvmseaverklvkllgnpttspygnpipgldelgvsvepvdtdlrrvdevarsgggralvcriaehvqldpdlmselkkvgvvpgneidivavagvnkpiqvqgseggtqlqpgiahavmvrvk > 7b25_D interface=35,37,38,40,45, dlidttemylrtiydleeegvvplrariaerleqSgPTvSatvaRmerdglltvaedrhleltkagraraisvmrkhrlaerllvdvigleweqvhleacrwehvmseaverklvkllgnpttspygnpipgldelgv
interface signature	SPTSR/SPTSRR/SPTSR/SPTSR

Estimated binding specificities ?

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# IC=20.648 IC/col=1.087 n_of_columns=19

specificity:

A |   1  11  96   0   1   0   3  96   0   0   0   0  67  96   3   0   0  55  82
C |   0   1   0   0   0   0  15   0   0   5  96   0  15   0  90  96   0  13   9
G |   1   4   0  96  94   0  15   0  96  88   0   0  13   0   3   0   0  13   1
T |  94  80   0   0   1  96  63   0   0   3   0  96   1   0   0   0  96  15   4

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updated Wed Sep 11 02:40:47 2024