interface graph thumbnail
legend  pdf

structure nameDTXR-LIKE IRON-DEPENDENT REGULATOR IDER (P39G VARIANT) COMPLEXED WITH COBALT AND ITS CONSENSUS DNA-BINDING SEQUENCE
referenceMarcos-Torres et al.
experimentX-ray (resolution=2.05, R-factor=0.227)
structural superfamilyIron-dependent repressor protein, dimerization domain;C-terminal domain of transcriptional repressors;"Winged helix" DNA-binding domain;
sequence familyIron dependent repressor, metal bindin; Iron dependent repressor, Nterminal D; FeoA domain;
multimeric complexes7b1y_ABCD 7b20_ABCD 7b23_ABCD 7b24_ABCD 7b25_ABCD
redundant complexes7b1y_D 7b20_D 7b23_D 7b25_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence

No structural evidence for specific binding to DNA (<4 informative columns)


Dendrogram of similar interfaces ?

matrix format
  
  TT----KATTQTTGLTRTKA--FTYT   L         +-----------------------------2p7c_B    
                                       +-1 
  --------------YG----------         +-2 +-----------------------------3eyi_B    
                                     ! ! 
  --DCLT--AGTTRG--RG--------   L   +-3 +-----------------------------5h3r_A    
                                   ! ! 
  ----RGSTRTSTHG------------   L --4 +-----------------------------3zpl_B    
                                   ! 
  --SG--PTPGTT--------HG----   L   +-----------------------------7d98_Q    
                                 

home
updated Sat Sep 14 01:56:31 2024