7b5y_ABCD : 3D-footprint complex

structure name	S. AGALACTIAE BUSR IN COMPLEX WITH ITS BUSAB-PROMOTOR DNA
source	STREPTOCOCCUS AGALACTIAE
experiment	NMR
structural superfamily	TrkA C-terminal domain-like;"Winged helix" DNA-binding domain;
reference complex	7b5y_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7b5y_A interface=7,44,47,63, eivtskYqkiavavaqriangdyevgeklksrttiastfnvspEtaRkglniladlqiltlkHgsgaiilskekaieflnqyetshsvailkgkirdnikaqqqemeelatlvddfllqtravskqyplapyeiivsedsehlgksigelnvwhqtgativaiehegkfivspgpfsvieqgdhiffvgdedvyarmktyfnlrmg > 7b5y_B interface=7,32,42,44,45,47,48,63, eivtskYqkiavavaqriangdyevgeklksRttiastfnvSpETaRKglniladlqiltlkHgsgaiilskekaieflnqyetshsvailkgkirdnikaqqqemeelatlvddfllqtravskqyplapyeiivsedsehlgksigelnvwhqtgativaiehegkfivspgpfsvieqgdhiffvgdedvyarmktyfnlr > 7b5y_C interface=41, ivtskyqkiavavaqriangdyevgeklksrttiastfnvSpetarkglniladlqiltlkhgsgaiilskekaieflnqyetshsvailkgkirdnikaqqqemeelatlvddfllqtravskqyplapyeiivsedsehlgksigelnvwhqtgativaiehegkfivspgpfsvieqgdhiffvgdedvyarmktyfnlr > 7b5y_D interface=31,35,40, vtskyqkiavavaqriangdyevgeklksrTtiaStfnvSpetarkglniladlqiltlkhgsgaiilskekaieflnqyetshsvailkgkirdnikaqqqemeelatlvddfllqtravskqyplapyeiivsedsehlgksigelnvwhqtgativaiehegkfivspgpfsvieqgdhiffvgdedvyarmktyfnlrmgl
interface signature	YERH/YRSETRKH/S/TSS

Estimated binding specificities ?

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# IC=11.668 IC/col=0.417 n_of_columns=28

specificity:

A |   0  24  24   0  73   7  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   7  96  96   0   0   0   7
C |   0  24  24   0   7  75  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   9   0   0  96   0   0  75
G |  96  24  24   0   9   7  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   7   0   0   0  96   0   7
T |   0  24  24  96   7   7  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  73   0   0   0   0  96   7

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updated Wed Sep 11 02:41:37 2024