7b5y_B : 3D-footprint complex

structure name	S. AGALACTIAE BUSR IN COMPLEX WITH ITS BUSAB-PROMOTOR DNA
experiment	NMR
structural superfamily	TrkA C-terminal domain-like;"Winged helix" DNA-binding domain;
sequence family	TrkAC domain; Bacterial regulatory proteins, gntR family;
multimeric complexes	7b5y_ABCD 7oz3_ABCD
redundant complexes	7oz3_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7b5y_B interface=7,32,42,44,45,47,48,63, eivtskYqkiavavaqriangdyevgeklksRttiastfnvSpETaRKglniladlqiltlkHgsgaiilskekaieflnqyetshsvailkgkirdnikaqqqemeelatlvddfllqtravskqyplapyeiivsedsehlgksigelnvwhqtgativaiehegkfivspgpfsvieqgdhiffvgdedvyarmktyfnlr
interface signature	YRSETRKH

Estimated binding specificities ?

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# IC=7.099 IC/col=1.014 n_of_columns=7

specificity:

A |  16  96  96   0   0   0  13
C |  13   0   0  96   0   0  54
G |  13   0   0   0  96   0  13
T |  54   0   0   0   0  96  16

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Dendrogram of similar interfaces ?

matrix format

  
  --------------------------------NT--ATAT----RG   L                                     +5t01_B    
                                                           +-----------------------------1 
  ----------------------------RGNT--ATAT--CTRA--   L     +-3                             +7x5e_F    
                                                         ! ! 
  ------------NASTRGHTSTLT----------------------   L   +-4 +-----------------------------2c6y_A    
                                                       ! ! 
  --STSTQAQGSTSART----------KT------------------   L   ! !       +---------------------5trd_B    
                                                     --5 +-------2 
  --------SCYG--KA--QG--RGQT--------------------   L   !         +---------------------6y42_B    
                                                       ! 
  RT------TCTGYTRT------------------------------       +-----------------------------7vpz_N

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updated Tue Dec 19 17:38:58 2023