7bcb_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HTH DNA BINDING PROTEIN ARDK FROM R388 PLASMID BOUND TO IR3 DNA
reference	Fernandez-Lopez et al. 'To ? ? ?
source	Escherichia coli K-12
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	Sigma3 and sigma4 domains of RNA polymerase sigma factors;
reference complex	7bca_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7bcb_A interface=35,36,37, rprlgrlteetidiarevlvegksqsdvarerglSRQrvssmvksvvsaaneiprewqrvevwlppnlaekvrqmeadakadvarknqltdaal > 7bcb_B interface=43,44,45,46,48, taaafddlrprlgrlteetidiarevlvegksqsdvarerglSRQRvSsmvksvvsaaneiprewqrvevwlppnlaekvrqmeadakadvarknql
interface signature	SRQ/SRQRS

Estimated binding specificities ?

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# IC=11.635 IC/col=0.776 n_of_columns=15

specificity:

A |   9   0   0   0  96  54  68  24  24  24  18   0  64   0  96
C |   6   0   0  96   0  20   9  24  24  24   9   0  32  96   0
G |   4  96   0   0   0  13   9  24  24  24  15  96   0   0   0
T |  77   0  96   0   0   9  10  24  24  24  54   0   0   0   0

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updated Sun Dec 17 00:20:36 2023