7bcb_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HTH DNA BINDING PROTEIN ARDK FROM R388 PLASMID BOUND TO IR3 DNA
reference	Fernandez-Lopez et al. 'To ? ? ?
source	Escherichia coli K-12
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	Sigma3 and sigma4 domains of RNA polymerase sigma factors;
reference complex	7bca_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7bcb_A interface=35,36,37, rprlgrlteetidiarevlvegksqsdvarerglSRQrvssmvksvvsaaneiprewqrvevwlppnlaekvrqmeadakadvarknqltdaal > 7bcb_B interface=43,44,45,46,48, taaafddlrprlgrlteetidiarevlvegksqsdvarerglSRQRvSsmvksvvsaaneiprewqrvevwlppnlaekvrqmeadakadvarknql
interface signature	SRQ/SRQRS

Estimated binding specificities ?

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# IC=11.628 IC/col=0.775 n_of_columns=15

specificity:

A |   9   0   0   0  96  51  74  24  24  24  24   0  49   0  96
C |   3   0   0  96   0  17   7  24  24  24  16   0  46  96   0
G |   3  96   0   0   0  21   8  24  24  24  14  96   1   0   0
T |  81   0  96   0   0   7   7  24  24  24  42   0   0   0   0

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updated Thu Jul 31 08:32:53 2025