interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE HTH DNA BINDING PROTEIN ARDK FROM R388 PLASMID BOUND TO IR3 DNA
(KORA domain-containing protein)
referenceFernandez-Lopez et al. 'To ? ? ?
sourceEscherichia coli K-12
experimentX-ray (resolution=2.80, R-factor=0.255)
structural superfamilySigma3 and sigma4 domains of RNA polymerase sigma factors;
multimeric complexes7bcb_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSRQRS

Estimated binding specificities ?

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# IC=7.099 IC/col=1.014 n_of_columns=7 specificity:   
A |  13  16   0   0  96   0  96
C |  16  13   0   0   0  96   0
G |  13  13   0  96   0   0   0
T |  54  54  96   0   0   0   0
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updated Fri Dec 23 03:26:24 2022