7bhy_AB : 3D-footprint complex

structure name	DNA-BINDING DOMAIN OF DEOR IN COMPLEX WITH THE DNA OPERATOR
reference	Novakova et al. 'Acta 77 1411 2021
source	Bacillus subtilis subsp. subtilis str. 168
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	Sigma3 and sigma4 domains of RNA polymerase sigma factors;
reference complex	7bhy_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7bhy_A interface=35,36,37,40,41, snaasekqqlsieaarlyyqsdysqqqiaeqlniSRPtvSRllqyakekgyvqirvm > 7bhy_B interface=21,31,32,33,34,36,37, sekqqlsieaarlyyqsdysQqqiaeqlniSRPTvSRllqyakekgyvqirvm
interface signature	SRPSR/QSRPTSR

Estimated binding specificities ?

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# IC=7.569 IC/col=0.582 n_of_columns=13

specificity:

A |   0  24  24  24   0  24  24   7   0   0   9   0  66
C |   0  24  24  24  73  24  24   0   0   8   7  96   7
G |   0  24  24  24   7  24  24   0  96   7   7   0   7
T |  96  24  24  24  16  24  24  89   0  81  73   0  16

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updated Sun Dec 15 02:59:21 2024