| structure name | DNA-BINDING DOMAIN OF DEOR IN COMPLEX WITH THE DNA OPERATOR (Deoxyribonucleoside regulator) |
| reference | Novakova et al. 'Acta 77 1411 2021 |
| source | Bacillus subtilis subsp. subtilis str. 168 |
| experiment | X-ray (resolution=2.30, R-factor=0.209) |
| structural superfamily | Sigma3 and sigma4 domains of RNA polymerase sigma factors; |
| multimeric complexes | 7bhy_AB |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | SRPSR |
Estimated binding specificities ?
| contact |  |
A | 0 0 9 9 0 67 C | 0 0 9 9 96 9 G | 0 96 9 9 0 11 T | 96 0 69 69 0 9scan! |
Dendrogram of similar interfaces ?
matrix formatKC------------------MGSGTTTTYC---- L +-----------------------------5f7q_C +-1 ------------YC----KTHGSTQTYTPT---- L +-2 +-----------------------------5x11_A ! ! ------------RG----EC--KG---------- L +-3 +-----------------------------4yrv_B ! ! --YGYAIGSC--YC--NG--RC------------ +-4 +-----------------------------4yfu_D ! ! ------------------DCLT--AGTTRG--RG L +-5 +-----------------------------5h3r_A ! ! ------------SGQG----YCNC---------- +-6 +-----------------------------2ve9_C ! ! ----------LT--------RTSGTGQTRG---- L +-7 +-----------------------------2xro_E ! ! --------------------RCTT--TTHTLA-- L --8 +-----------------------------7e1b_B ! ------------------TT--RGRT-------- L +-----------------------------2v1u_A |
home
updated Tue Dec 19 17:39:57 2023