interface graph thumbnail
legend  pdf

structure nameDNA-BINDING DOMAIN OF DEOR IN COMPLEX WITH THE DNA OPERATOR
(Deoxyribonucleoside regulator)
referenceNovakova et al. 'Acta 77 1411 2021
sourceBacillus subtilis subsp. subtilis str. 168
experimentX-ray (resolution=2.30, R-factor=0.209)
structural superfamilySigma3 and sigma4 domains of RNA polymerase sigma factors;
multimeric complexes7bhy_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSRPSR

Estimated binding specificities ?

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# IC=5.339 IC/col=0.890 n_of_columns=6 specificity:   
A |   0   0   9   9   0  69
C |   0   0   9  11  96   9
G |   0  96  11   9   0   9
T |  96   0  67  67   0   9
scan!

Dendrogram of similar interfaces ?

matrix format
  
  RT--LANTHGTTETYTRG--------   L       +-----------------------------1f4k_B    
                                     +-1 
  --TT------KATTQTTGLTRT--KA   L   +-2 +-----------------------------2p7c_B    
                                   ! ! 
  ------DCLT--AGTTRG--RG----   L --3 +-----------------------------5h3r_A    
                                   ! 
  ----------------------YCFA       +-----------------------------6pe2_B    
                                 

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updated Sat Sep 14 01:57:33 2024