7bhy_A : 3D-footprint complex

structure name	DNA-BINDING DOMAIN OF DEOR IN COMPLEX WITH THE DNA OPERATOR (Deoxyribonucleoside regulator)
reference	Novakova et al. 'Acta 77 1411 2021
source	Bacillus subtilis subsp. subtilis str. 168
experiment	X-ray (resolution=2.30, R-factor=0.209)
structural superfamily	Sigma3 and sigma4 domains of RNA polymerase sigma factors;
multimeric complexes	7bhy_AB
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7bhy_A interface=35,36,37,40,41, snaasekqqlsieaarlyyqsdysqqqiaeqlniSRPtvSRllqyakekgyvqirvm
interface signature	SRPSR

Estimated binding specificities ?

contact

# IC=5.339 IC/col=0.890 n_of_columns=6

specificity:

A |   9   0  67  67   0  96
C |   9   0   9   9  96   0
G |   9  96  11   9   0   0
T |  69   0   9  11   0   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RT--LANTHGTTETYTRG--------   L       +-----------------------------1f4k_B    
                                     +-1 
  ------DCLT--AGTTRG--RG----   L   +-2 +-----------------------------5h3r_A    
                                   ! ! 
  --TT------KATTQTTGLTRT--KA   L --3 +-----------------------------2p7c_B    
                                   ! 
  ----------------------YCFA   L   +-----------------------------6pe2_B

home
updated Wed Dec 18 08:14:34 2024