7bil_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF HELICASE PIF1 FROM THERMUS OSHIMAI IN COMPLEX WITH OLIGO GGTTTGGTTTGGTT
reference	Chen et al. 'Nucleic 49 4129 2021
source	Thermus oshimai JL-2
experiment	X-ray (resolution=2.21, R-factor=?)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
reference complex	6s3h_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7bil_A interface=65,72,150,152,236,237,289,292,293,296,326,328,329,330,331,366,385, glsseqqraflavtqtphpahlitgpagtgkttllyalqefykgravtlaptgtaalqargqtvHsffrfpArllryrhpedirppgphsplrkaieqmevlildevgmvrvdlleamdwalrktrkrleepfggvkvlllgdtrqlepVvPggeealyiartwggpfffqahvweevalrvhrlwesqrqredplfaellkrlrqgdpqaletlnraavrpdggeepgtliltpRRkeadalnlkrlealpgkpleyqaqvkgefaetdfpteaaltlkkgaqvillRndPLgeYfngdlgwvedleaealavrlkrngrrvviRpFVWEkivytydsereeikpqvvgtfrqvpvrlawaltvHkaqgltldkvhlelgrglFahgqlyvaltrvrrlqdlslsrpiaptellwrpevevfetriqegiwqksh > 7bil_B interface=65,71,72,111,150,152,236,289,330,366,385, glsseqqraflavtqtphpahlitgpagtgkttllyalqefykgravtlaptgtaalqargqtvHsffrfPArllryrhpedirppgphsplrkaieqmevlildevgmvRvdlleamdwalrktrkrleepfggvkvlllgdtrqlepVvPggeealyiartwggpfffqahvweevalrvhrlwesqrqredplfaellkrlrqgdpqaletlnraavrpdggeepgtliltpRrkeadalnlkrlealpgkpleyqaqvkgefaetdfpteaaltlkkgaqvillRndplgeyfngdlgwvedleaealavrlkrngrrvvirpfvWekivytydsereeikpqvvgtfrqvpvrlawaltvHkaqgltldkvhlelgrglFahgqlyvaltrvrrlqdlslsrpiaptellwrpevevfetriqegiwqksh
interface signature	HAVPRRRPLYRFVWEHF/HPARVPRRWHF

Estimated binding specificities ?

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# IC=14.976 IC/col=1.152 n_of_columns=13

specificity:

A |   0   0   0   7   0   0   0   0   0   0   4   0  14
C |   0   0   0   7   0   0   0   0   0   0   4   0  16
G |  96   0   0   7  96  96   0   0   0  96  84   0  14
T |   0  96  96  75   0   0  96  96  96   0   4  96  52

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updated Sun Dec 15 02:59:29 2024