7bzg_AB : 3D-footprint complex

structure name	STRUCTURE OF BACILLUS SUBTILIS HXLR, WILD TYPE IN COMPLEX WITH FORMALDEHYDE AND DNA
reference	Chen et al. 'Nat 12 581 2021
source	Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168)
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	7bzg_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7bzg_A interface=39,40,51,52,53,55,77, srmddkrfncekeltlaviggkwkmlilwhlgkegtkrFNelktlipditQKIlVnqlreleqdmivhrevypvvpPkveysltphgeslmpileamyewgkgymelidi > 7bzg_B interface=39,40,50,51,52,53,55,77, srmddkrfncekeltlaviggkwkmlilwhlgkegtkrFNelktlipdiTQKIlVnqlreleqdmivhrevypvvpPkveysltphgeslmpileamyewgkgymelidi
interface signature	FNQKIVP/FNTQKIVP

Estimated binding specificities ?

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# IC=11.810 IC/col=0.591 n_of_columns=20

specificity:

A |   3  24   0   0  96   0   0  24  24  24  24  24   3   0  68  12  24  24   0  16
C |  86  24   0   4   0   0  96  24  24  24  24  24   0   0  15  15  24  24   9   3
G |   4  24  93   3   0   0   0  24  24  24  24  24  92  96   9  11  24  24  16  77
T |   3  24   3  89   0  96   0  24  24  24  24  24   1   0   4  58  24  24  71   0

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updated Sun Dec 15 03:04:53 2024