7bzg_AB : 3D-footprint complex

structure name	STRUCTURE OF BACILLUS SUBTILIS HXLR, WILD TYPE IN COMPLEX WITH FORMALDEHYDE AND DNA
reference	Chen et al. 'Nat 12 581 2021
source	Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168)
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	7bzg_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7bzg_A interface=39,40,51,52,53,55,77, srmddkrfncekeltlaviggkwkmlilwhlgkegtkrFNelktlipditQKIlVnqlreleqdmivhrevypvvpPkveysltphgeslmpileamyewgkgymelidi > 7bzg_B interface=39,40,50,51,52,53,55,77, srmddkrfncekeltlaviggkwkmlilwhlgkegtkrFNelktlipdiTQKIlVnqlreleqdmivhrevypvvpPkveysltphgeslmpileamyewgkgymelidi
interface signature	FNQKIVP/FNTQKIVP

Estimated binding specificities ?

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# IC=12.882 IC/col=0.644 n_of_columns=20

specificity:

A |   7  62  24  24  66   1   0   0  24  24  24  24  24   0  96   1  86   0   0   0
C |  84  10  24  24  14   9  96  95  24  24  24  24  24   0   0   0   5  96  23   0
G |   5  13  24  24   9   7   0   0  24  24  24  24  24  96   0   0   1   0  17  94
T |   0  11  24  24   7  79   0   1  24  24  24  24  24   0   0  95   4   0  56   2

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updated Wed Sep 11 02:57:32 2024