7bzg_EF : 3D-footprint complex

structure name	STRUCTURE OF BACILLUS SUBTILIS HXLR, WILD TYPE IN COMPLEX WITH FORMALDEHYDE AND DNA
reference	Chen et al. 'Nat 12 581 2021
source	Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168)
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	7bzg_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7bzg_E interface=39,40,51,52,53,55,77, srmddkrfncekeltlaviggkwkmlilwhlgkegtkrFNelktlipditQKIlVnqlreleqdmivhrevypvvpPkveysltphgeslmpileamyewgkgymelidi > 7bzg_F interface=39,40,50,51,52,53,77, srmddkrfncekeltlaviggkwkmlilwhlgkegtkrFNelktlipdiTQKIlvnqlreleqdmivhrevypvvpPkveysltphgeslmpileamyewgkgymelidi
interface signature	FNQKIVP/FNTQKIP

Estimated binding specificities ?

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# IC=9.380 IC/col=0.521 n_of_columns=18

specificity:

A |   3  24   0   0  81   0   0  24  24  24  24  24  24   3  96  17  24   6
C |  92  24   0  17   3   3  96  24  24  24  24  24  24   3   0  13  24  82
G |   0  24  79   4   6   0   0  24  24  24  24  24  24  87   0  15  24   8
T |   1  24  17  75   6  93   0  24  24  24  24  24  24   3   0  51  24   0

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updated Wed Sep 11 02:57:42 2024