7bzg_EF : 3D-footprint complex

structure name	STRUCTURE OF BACILLUS SUBTILIS HXLR, WILD TYPE IN COMPLEX WITH FORMALDEHYDE AND DNA
reference	Chen et al. 'Nat 12 581 2021
source	Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168)
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	7bzg_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7bzg_E interface=39,40,51,52,53,55,77, srmddkrfncekeltlaviggkwkmlilwhlgkegtkrFNelktlipditQKIlVnqlreleqdmivhrevypvvpPkveysltphgeslmpileamyewgkgymelidi > 7bzg_F interface=39,40,50,51,52,53,77, srmddkrfncekeltlaviggkwkmlilwhlgkegtkrFNelktlipdiTQKIlvnqlreleqdmivhrevypvvpPkveysltphgeslmpileamyewgkgymelidi
interface signature	FNQKIVP/FNTQKIP

Estimated binding specificities ?

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# IC=9.783 IC/col=0.543 n_of_columns=18

specificity:

A |   5  24   0   4  92   5   0  24  24  24  24  24  24   4  96   8  24   0
C |  87  24   0   0   4   4  96  24  24  24  24  24  24   5   0  16  24  91
G |   0  24  80   4   0   4   0  24  24  24  24  24  24  83   0  14  24   1
T |   4  24  16  88   0  83   0  24  24  24  24  24  24   4   0  58  24   4

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updated Sun Dec 15 03:05:04 2024