7bzg_IJ : 3D-footprint complex

structure name	STRUCTURE OF BACILLUS SUBTILIS HXLR, WILD TYPE IN COMPLEX WITH FORMALDEHYDE AND DNA
reference	Chen et al. 'Nat 12 581 2021
source	Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168)
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	7bzg_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7bzg_I interface=39,40,50,51,52,53,55,77, srmddkrfncekeltlaviggkwkmlilwhlgkegtkrFNelktlipdiTQKIlVnqlreleqdmivhrevypvvpPkveysltphgeslmpileamyewgkgymelidi > 7bzg_J interface=40,50,51,52,53,77, srmddkrfncekeltlaviggkwkmlilwhlgkegtkrfNelktlipdiTQKIlvnqlreleqdmivhrevypvvpPkveysltphgeslmpileamyewgkgymelidi
interface signature	FNTQKIVP/NTQKIP

Estimated binding specificities ?

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# IC=16.130 IC/col=0.807 n_of_columns=20

specificity:

A |   0  84   6   0  96   0   0   7  24  24  24  24  24   0  96   6  73   0   3   3
C |  92   3   3   0   0   0  96  70  24  24  24  24  24   0   0   3   9  96   0   3
G |   0   6  84   0   0   0   0  12  24  24  24  24  24  96   0   3  11   0   5  87
T |   4   3   3  96   0  96   0   7  24  24  24  24  24   0   0  84   3   0  88   3

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updated Sun Dec 15 03:05:16 2024