7ce1_CD : 3D-footprint complex

structure name	COMPLEX STRUCTURE OF TRANSCRIPTION FACTOR SGHR WITH ITS COGNATE DNA
reference	Zhang et al. J.Biol.Chem. 295 12290 2020
source	AGROBACTERIUM TUMEFACIENS A6
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	Periplasmic binding protein-like I;lambda repressor-like DNA-binding domains;
reference complex	7ce1_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7ce1_C interface=5,16,17,18,20,28,29,55,56, erptLktiaymtglgITTvSralkdapDIgaetkervrliaqqigyqpnragvrLRtgktnvialvlsvdeelmgftsqmvfgitevlattqyhlvvtphthakdsmvpiryiletgsadgviiskiepndprvrfmterkmpfvthgrsdmgiehayhdfdneayayeaverlaqcgrkriaiivppsrfafhdharkgftrgirdfgvsefpldaitietpldkirdfgkrlmqsddrpdgivsisgsstialvagfeaagvrigkdidivskqsaeflnwiqpqihtvnediklagrelakallaringappetlqsvsrpvwssmapk > 7ce1_D interface=5,16,17,18,20,28,29,55,56, erptLktiaymtglgITTvSralkdapDIgaetkervrliaqqigyqpnragvrLRtgktnvialvlsvdeelmgftsqmvfgitevlattqyhlvvtphthakdsmvpiryiletgsadgviiskiepndprvrfmterkmpfvthgrsdmgiehayhdfdneayayeaverlaqcgrkriaiivppsrfafhdharkgftrgirdfgvsefpldaitietpldkirdfgkrlmqsddrpdgivsisgsstialvagfeaagvrigkdidivskqsaeflnwiqpqihtvnediklagrelakallaringappetlqsvsrpvws
interface signature	LITTSDILR/LITTSDILR

Estimated binding specificities ?

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# IC=15.960 IC/col=1.140 n_of_columns=14

specificity:

A |  11   0   0   9  96  96   0   0   0   0   9   0  96   0
C |  67   0   0  67   0   0  96   0   0   0  11  96   0   0
G |   9   0  96  11   0   0   0  96   0   0  67   0   0  96
T |   9  96   0   9   0   0   0   0  96  96   9   0   0   0

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updated Sun Dec 15 03:29:11 2024