7ce1_D : 3D-footprint complex

structure name	COMPLEX STRUCTURE OF TRANSCRIPTION FACTOR SGHR WITH ITS COGNATE DNA (LACI-TYPE TRANSCRIPTION FACTOR)
reference	Zhang et al. J.Biol.Chem. 295 12290 2020
source	AGROBACTERIUM TUMEFACIENS A6
experiment	X-ray (resolution=3.20, R-factor=0.236)
structural superfamily	Periplasmic binding protein-like I;lambda repressor-like DNA-binding domains;
sequence family	Periplasmic binding proteins and sugar b 215;
multimeric complexes	7ce1_CD 7ce1_OP 7ce1_ST
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7ce1_D interface=5,16,17,18,20,28,29,55,56, erptLktiaymtglgITTvSralkdapDIgaetkervrliaqqigyqpnragvrLRtgktnvialvlsvdeelmgftsqmvfgitevlattqyhlvvtphthakdsmvpiryiletgsadgviiskiepndprvrfmterkmpfvthgrsdmgiehayhdfdneayayeaverlaqcgrkriaiivppsrfafhdharkgftrgirdfgvsefpldaitietpldkirdfgkrlmqsddrpdgivsisgsstialvagfeaagvrigkdidivskqsaeflnwiqpqihtvnediklagrelakallaringappetlqsvsrpvws
interface signature	LITTSDILR

Estimated binding specificities ?

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# IC=7.965 IC/col=0.996 n_of_columns=8

specificity:

A |   9   0   0   0   9   0  96   9
C |  67   0   0   0  11  96   0   9
G |  11  96   0   0  67   0   0  67
T |   9   0  96  96   9   0   0  11

scan!

Dendrogram of similar interfaces ?

matrix format

  
  LT----ITTGTTST--DCIT--LCRT----------   L                             +--7ce1_D    
                                                   +-------------------2 
  IT--ST--ATTTSTRG--VTAGLCAC----------   L         !                   !  +1rzr_C    
                                             +-----3                   +--1 
  ITYTSGMTAA--STRGNT--AGLCAT----------   L   !     !                      +3oqm_C    
                                           --4     ! 
  LCYCSTYGQG--STRTHA--AGLGAG----------   L   !     +----------------------2kej_A    
                                             ! 
  --------------------------YGITSTKTEG   L   +----------------------------5f55_A

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updated Wed Dec 18 08:22:36 2024