7ce1_OP : 3D-footprint complex

structure name	COMPLEX STRUCTURE OF TRANSCRIPTION FACTOR SGHR WITH ITS COGNATE DNA
reference	Zhang et al. J.Biol.Chem. 295 12290 2020
source	AGROBACTERIUM TUMEFACIENS A6
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	Periplasmic binding protein-like I;lambda repressor-like DNA-binding domains;
reference complex	7ce1_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7ce1_O interface=5,16,17,18,20,21,28,55,56, erptLktiaymtglgITTvSRalkdapDigaetkervrliaqqigyqpnragvrLRtgktnvialvlsvdeelmgftsqmvfgitevlattqyhlvvtphthakdsmvpiryiletgsadgviiskiepndprvrfmterkmpfvthgrsdmgiehayhdfdneayayeaverlaqcgrkriivppsrfafhdharkgftrgirdfgvsefpldaitietpldkirdfgkrlmqsddrpivsisgsstialvagfeaagvrigkdidskqsaeflnwiqpqihtvnediklagrelakallarinppetlqsvsrpvwss > 7ce1_P interface=5,17,18,20,28,29,55,56, erptLktiaymtglgiTTvSralkdapDIgaetkervrliaqqigyqpnragvrLRtgktnvialvlsvdeelmgftsqmvfgitevlattqyhlvvtphkdsmvpiryiletgsadgviiskiepndprvrfmterkmpfvthgrsdmgiehayhdfdneayayeaverlaqcgrkriaiivppsrfafhdharkgftrgirdfgvsefpldaitietpldkirdfgkrlmqsddrpdgivsisgsstialvagfeaagvrigkidivskqsaeflnwiqpqihtvnediklagrelakallaringappetlqsvsrpvwss
interface signature	LITTSRDLR/LTTSDILR

Estimated binding specificities ?

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# IC=14.619 IC/col=0.975 n_of_columns=15

specificity:

A |   0   0   0   0  86  24   0   0   5   3  11   4  86   0  76
C |  96   3   0  96   4  24  96   0  12   3   3  86   3   0  14
G |   0   4  96   0   3  24   0  96   3   3  70   3   3  96   3
T |   0  89   0   0   3  24   0   0  76  87  12   3   4   0   3

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updated Wed Sep 11 03:20:08 2024