7ce1_OP : 3D-footprint complex

structure name	COMPLEX STRUCTURE OF TRANSCRIPTION FACTOR SGHR WITH ITS COGNATE DNA
reference	Zhang et al. J.Biol.Chem. 295 12290 2020
source	AGROBACTERIUM TUMEFACIENS A6
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	Periplasmic binding protein-like I;lambda repressor-like DNA-binding domains;
reference complex	7ce1_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7ce1_O interface=5,16,17,18,20,21,28,55,56, erptLktiaymtglgITTvSRalkdapDigaetkervrliaqqigyqpnragvrLRtgktnvialvlsvdeelmgftsqmvfgitevlattqyhlvvtphthakdsmvpiryiletgsadgviiskiepndprvrfmterkmpfvthgrsdmgiehayhdfdneayayeaverlaqcgrkriivppsrfafhdharkgftrgirdfgvsefpldaitietpldkirdfgkrlmqsddrpivsisgsstialvagfeaagvrigkdidskqsaeflnwiqpqihtvnediklagrelakallarinppetlqsvsrpvwss > 7ce1_P interface=5,17,18,20,28,29,55,56, erptLktiaymtglgiTTvSralkdapDIgaetkervrliaqqigyqpnragvrLRtgktnvialvlsvdeelmgftsqmvfgitevlattqyhlvvtphkdsmvpiryiletgsadgviiskiepndprvrfmterkmpfvthgrsdmgiehayhdfdneayayeaverlaqcgrkriaiivppsrfafhdharkgftrgirdfgvsefpldaitietpldkirdfgkrlmqsddrpdgivsisgsstialvagfeaagvrigkidivskqsaeflnwiqpqihtvnediklagrelakallaringappetlqsvsrpvwss
interface signature	LITTSRDLR/LTTSDILR

Estimated binding specificities ?

contact

# IC=17.574 IC/col=1.098 n_of_columns=16

specificity:

A |   1   0   0   0   6  96  81   0   0  10   0   5   0  96   0  66
C |   0  96   0   0  80   0   5  96   0  11   0   5  96   0   0  10
G |   5   0   0  96   5   0   5   0  96   5   0  80   0   0  96  10
T |  90   0  96   0   5   0   5   0   0  70  96   6   0   0   0  10

scan!

home
updated Thu Jul 31 09:14:07 2025