interface graph thumbnail
legend  pdf

structure nameCOMPLEX STRUCTURE OF TRANSCRIPTION FACTOR SGHR WITH ITS COGNATE DNA
referenceZhang et al. J.Biol.Chem. 295 12290 2020
sourceAGROBACTERIUM TUMEFACIENS A6
experimentX-ray (resolution=3.20, R-factor=?)
structural superfamilyPeriplasmic binding protein-like I;lambda repressor-like DNA-binding domains;
reference complex7ce1_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureLITTSRDLR/LTTSDILR

Estimated binding specificities ?

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# IC=17.598 IC/col=1.100 n_of_columns=16 specificity:   
A |   0   0   0   0   5  96  80   0   0  10   0   6   0  96   0  65
C |   0  96   0   0  80   0   6  96   0   5   0   5  96   0   0  11
G |   5   0   0  96   5   0   5   0  96  10   0  80   0   0  96  10
T |  91   0  96   0   6   0   5   0   0  71  96   5   0   0   0  10
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updated Sun Dec 15 03:29:33 2024