7ce1_ST : 3D-footprint complex

structure name	COMPLEX STRUCTURE OF TRANSCRIPTION FACTOR SGHR WITH ITS COGNATE DNA
reference	Zhang et al. J.Biol.Chem. 295 12290 2020
source	AGROBACTERIUM TUMEFACIENS A6
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	Periplasmic binding protein-like I;lambda repressor-like DNA-binding domains;
reference complex	7ce1_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7ce1_S interface=5,16,17,18,20,29,55,56, erptLktiaymtglgITTvSralkdapdIgaetkervrliaqqigyqpnragvrLRtgktnvialvlsvdeelmgftsqmvfgitevlattqyhlvvtphthakdsmvpiryiletgsadgviiskiepndprvrfmterkmpfvthgrsdmgiehayhdfdneayayeivppsrfafhdharkgftrgirdfgvseftietpldkirdfsgsstialvagfeaagvrigkediklagrelakallaringappetlqs > 7ce1_T interface=5,16,17,20,55,56, erptLktiaymtglgITtvSralkdapdigaetkervrliaqqigyqpnragvrLRtgktnvialvlsvdeelmgftsqmvfgitevlattqyhlvvtphthakdsmvpiryiletgsadgviiskiepndprvrfmterkmpfvthgrsdmgiehayhddneayayeaverlaqcgrkvppsrfafhdharkgftrgirdfgvseftietpldkirdfgkrlmqsddrpdgsstialvagfeaagvrigeflnwiqpqihvnediklagrelakallaringappetlqsv
interface signature	LITTSILR/LITSLR

Estimated binding specificities ?

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# IC=11.772 IC/col=1.070 n_of_columns=11

specificity:

A |   0  10  78  61   0   0   0   0   0   0  87
C |   0  61   0  10  96   0   0   0   0  96   0
G |  96   8   8  17   0  96   0   0  96   0   8
T |   0  17  10   8   0   0  96  96   0   0   1

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updated Sun Dec 15 03:29:50 2024