7ce1_ST : 3D-footprint complex

structure name	COMPLEX STRUCTURE OF TRANSCRIPTION FACTOR SGHR WITH ITS COGNATE DNA
reference	Zhang et al. J.Biol.Chem. 295 12290 2020
source	AGROBACTERIUM TUMEFACIENS A6
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	Periplasmic binding protein-like I;lambda repressor-like DNA-binding domains;
reference complex	7ce1_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7ce1_S interface=5,16,17,18,20,29,55,56, erptLktiaymtglgITTvSralkdapdIgaetkervrliaqqigyqpnragvrLRtgktnvialvlsvdeelmgftsqmvfgitevlattqyhlvvtphthakdsmvpiryiletgsadgviiskiepndprvrfmterkmpfvthgrsdmgiehayhdfdneayayeivppsrfafhdharkgftrgirdfgvseftietpldkirdfsgsstialvagfeaagvrigkediklagrelakallaringappetlqs > 7ce1_T interface=5,16,17,20,55,56, erptLktiaymtglgITtvSralkdapdigaetkervrliaqqigyqpnragvrLRtgktnvialvlsvdeelmgftsqmvfgitevlattqyhlvvtphthakdsmvpiryiletgsadgviiskiepndprvrfmterkmpfvthgrsdmgiehayhddneayayeaverlaqcgrkvppsrfafhdharkgftrgirdfgvseftietpldkirdfgkrlmqsddrpdgsstialvagfeaagvrigeflnwiqpqihvnediklagrelakallaringappetlqsv
interface signature	LITTSILR/LITSLR

Estimated binding specificities ?

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# IC=11.096 IC/col=1.009 n_of_columns=11

specificity:

A |   0   0   0  96  24   0   0  16   0  13   0
C |   0   0  96   0  24  96   0  13   0  16  96
G |   0  96   0   0  24   0  96  13   0  54   0
T |  96   0   0   0  24   0   0  54  96  13   0

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updated Sun Dec 17 00:58:47 2023