7csy_ABCD : 3D-footprint complex

structure name	PSEUDOMONAS AERUGINOSA ANTITOXIN HIGA WITH HIGBA PROMOTER
reference	Song et al. Environ.Microbiol. 23 1541 2021
source	PSEUDOMONAS AERUGINOSA PAO1
experiment	X-ray (resolution=2.29, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	7csw_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7csy_A interface=31,32,33,36,43, rpihpgeilrdeflmefdispaalaralkvSAPtvNdivreqRgisadmairlgryfdtsaqfwmnlqseyslatayaangkqieheiepll > 7csy_B interface=37,38,39,40,42,49, matngmrpihpgeilrdeflmefdispaalaralkvSAPTvNdivreqRgisadmairlgryfdtsaqfwmnlqseyslatayaangkqieheiepl > 7csy_C interface=23,32,33,34,35,37,38,44, mrpihpgeilrdeflmefdispAalaralkvSAPTvNDivreqRgisadmairlgryfdtsaqfwmnlqseyslatayaangkqieheiepl > 7csy_D interface=25,34,35,36,39,46, ngmrpihpgeilrdeflmefdispAalaralkvSAPtvNdivreqRgisadmairlgryfdtsaqfwmnlqseyslatayaangkqieheiepll
interface signature	SAPNR/SAPTNR/ASAPTNDR/ASAPNR

Estimated binding specificities ?

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# IC=12.378 IC/col=0.619 n_of_columns=20

specificity:

A |  96   1  10  24  24   0  24  96   0   5   0  24  80  24  24   5  24   0  24  80
C |   0  90  69  24  24   0  24   0  96   5   0  24   5  24  24  74  24   0  24   5
G |   0   5  12  24  24   0  24   0   0  80   0  24   5  24  24  10  24   0  24   6
T |   0   0   5  24  24  96  24   0   0   6  96  24   6  24  24   7  24  96  24   5

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updated Sun Dec 15 03:52:32 2024