7d98_BPQ : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FULL-LENGTH CBNR COMPLEXED WITH THE TARGET DNA COMPLEX
reference	Giannopoulou et al. 'Febs 288 4560 2021
source	Cupriavidus necator
experiment	X-ray (resolution=3.60, R-factor=?)
structural superfamily	Periplasmic binding protein-like II;"Winged helix" DNA-binding domain;
reference complex	7d98_Q
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7d98_B interface=28,30, mefrqlkyfiavaeagnmaaaakrlhvSqPpitrqmqaleadlgvvlleraghafledarrilelagrsgdrsraaargdvgelsvayfgtpiyrslplllrafltstptatvslthmtkdeqvegllagtihvgfsrffprhpgieivniaqedlylavhrsqsgkfgktckladlraveltlfprggrpsfadeviglfkhagiepriarvvedataalaltmagaassivpasvaairwpdiafarivrvkvpiscifrkekqppilarfvehvrrsakd > 7d98_P interface=30,31, mefrqlkyfiavaeagnmaaaakrlhvsqPPitrqmqaleadlgvvllerieltaaghafledarrilelagrsgdrsraaargdvgelsvayfgtpiyrslplllrafltstptatvslthmtkdeqvegllagtihvgfsrffprhpgieivniaqedlylavhrsqsgkfgktckladlraveltlfprggrpsfadeviglfkhagiepriarvvedataalaltmagaassivpasvaairwpdiafarivgtrvkvpiscifrkekqppilarfvehvrrsa > 7d98_Q interface=28,30,31,33,52, mefrqlkyfiavaeagnmaaaakrlhvSqPPiTrqmqaleadlgvvllersHrgieltaaghafledarrilelagrsgdrsraaargdvgelsvayfgtpiyrslplllrafltstptatvslthmtkdeqvegllagtihvgfsrffprhpgieivniaqedlylavhrsqsgkfgktckladlraveltlfpsfadeviglfkhagiepriarvvedataalaltmagaassivpasvaairwpdiafarivgtrvkvpiscifrkekqppilarfvehvrrsak
interface signature	SP/PP/SPPTH

Estimated binding specificities ?

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# IC=6.991 IC/col=0.333 n_of_columns=21

specificity:

A |  16  24  24  24  24  16  91  24  24  24  24  24  24  24   0   0  96  16  24  24   4
C |  66  24  24  24  24  10   4  24  24  24  24  24  24  24   0  96   0  12  24  24  87
G |   6  24  24  24  24  12   0  24  24  24  24  24  24  24  96   0   0  18  24  24   5
T |   8  24  24  24  24  58   1  24  24  24  24  24  24  24   0   0   0  50  24  24   0

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updated Wed Sep 11 03:58:13 2024