7d98_BPQ : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FULL-LENGTH CBNR COMPLEXED WITH THE TARGET DNA COMPLEX
reference	Giannopoulou et al. 'Febs 288 4560 2021
source	Cupriavidus necator
experiment	X-ray (resolution=3.60, R-factor=?)
structural superfamily	Periplasmic binding protein-like II;"Winged helix" DNA-binding domain;
reference complex	7d98_Q
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7d98_B interface=28,30, mefrqlkyfiavaeagnmaaaakrlhvSqPpitrqmqaleadlgvvlleraghafledarrilelagrsgdrsraaargdvgelsvayfgtpiyrslplllrafltstptatvslthmtkdeqvegllagtihvgfsrffprhpgieivniaqedlylavhrsqsgkfgktckladlraveltlfprggrpsfadeviglfkhagiepriarvvedataalaltmagaassivpasvaairwpdiafarivrvkvpiscifrkekqppilarfvehvrrsakd > 7d98_P interface=30,31, mefrqlkyfiavaeagnmaaaakrlhvsqPPitrqmqaleadlgvvllerieltaaghafledarrilelagrsgdrsraaargdvgelsvayfgtpiyrslplllrafltstptatvslthmtkdeqvegllagtihvgfsrffprhpgieivniaqedlylavhrsqsgkfgktckladlraveltlfprggrpsfadeviglfkhagiepriarvvedataalaltmagaassivpasvaairwpdiafarivgtrvkvpiscifrkekqppilarfvehvrrsa > 7d98_Q interface=28,30,31,33,52, mefrqlkyfiavaeagnmaaaakrlhvSqPPiTrqmqaleadlgvvllersHrgieltaaghafledarrilelagrsgdrsraaargdvgelsvayfgtpiyrslplllrafltstptatvslthmtkdeqvegllagtihvgfsrffprhpgieivniaqedlylavhrsqsgkfgktckladlraveltlfpsfadeviglfkhagiepriarvvedataalaltmagaassivpasvaairwpdiafarivgtrvkvpiscifrkekqppilarfvehvrrsak
interface signature	SP/PP/SPPTH

Estimated binding specificities ?

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# IC=6.552 IC/col=0.312 n_of_columns=21

specificity:

A |  17  24  24  24  24  14  96  24  24  24  24  24  24  24   0   4  96  13  24  24   4
C |  62  24  24  24  24  13   0  24  24  24  24  24  24  24   0  82   0  14  24  24  82
G |   4  24  24  24  24  13   0  24  24  24  24  24  24  24  96   6   0   8  24  24   4
T |  13  24  24  24  24  56   0  24  24  24  24  24  24  24   0   4   0  61  24  24   6

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updated Thu Jul 31 09:56:14 2025