7d98_BPQ : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FULL-LENGTH CBNR COMPLEXED WITH THE TARGET DNA COMPLEX
reference	Giannopoulou et al. 'Febs 288 4560 2021
source	Cupriavidus necator
experiment	X-ray (resolution=3.60, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5xxp_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7d98_B interface=28,30, mefrqlkyfiavaeagnmaaaakrlhvSqPpitrqmqaleadlgvvlleraghafledarrilelagrsgdrsraaargdvgelsvayfgtpiyrslplllrafltstptatvslthmtkdeqvegllagtihvgfsrffprhpgieivniaqedlylavhrsqsgkfgktckladlraveltlfprggrpsfadeviglfkhagiepriarvvedataalaltmagaassivpasvaairwpdiafarivrvkvpiscifrkekqppilarfvehvrrsakd > 7d98_P interface=30,31, mefrqlkyfiavaeagnmaaaakrlhvsqPPitrqmqaleadlgvvllerieltaaghafledarrilelagrsgdrsraaargdvgelsvayfgtpiyrslplllrafltstptatvslthmtkdeqvegllagtihvgfsrffprhpgieivniaqedlylavhrsqsgkfgktckladlraveltlfprggrpsfadeviglfkhagiepriarvvedataalaltmagaassivpasvaairwpdiafarivgtrvkvpiscifrkekqppilarfvehvrrsa > 7d98_Q interface=28,30,31,33,52, mefrqlkyfiavaeagnmaaaakrlhvSqPPiTrqmqaleadlgvvllersHrgieltaaghafledarrilelagrsgdrsraaargdvgelsvayfgtpiyrslplllrafltstptatvslthmtkdeqvegllagtihvgfsrffprhpgieivniaqedlylavhrsqsgkfgktckladlraveltlfpsfadeviglfkhagiepriarvvedataalaltmagaassivpasvaairwpdiafarivgtrvkvpiscifrkekqppilarfvehvrrsak
interface signature	SP/PP/SPPTH

Estimated binding specificities ?

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# IC=6.982 IC/col=0.333 n_of_columns=21

specificity:

A |  17  24  24  24  24  17  82  24  24  24  24  24  24  24   0   4  96  21  24  24   0
C |  75  24  24  24  24  10   4  24  24  24  24  24  24  24   0  91   0  13  24  24  92
G |   0  24  24  24  24  13   4  24  24  24  24  24  24  24  96   1   0   8  24  24   0
T |   4  24  24  24  24  56   6  24  24  24  24  24  24  24   0   0   0  54  24  24   4

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updated Fri Jun 26 08:29:55 2026