7dvv_AB : 3D-footprint complex

structure name	HEME SENSOR PROTEIN PEFR FROM STREPTOCOCCUS AGALACTIAE BOUND TO OPERATOR DNA (28-MER)
reference	Nishinaga et al. 'Commun 4 467 2021
source	Streptococcus agalactiae serotype III (strain NEM316) / Streptococcus agalactiae serotype III (strain NEM316) / Streptococcus agalactiae serotype III (strain NEM316) / Streptococcus agalactiae serotype III (strain NEM316)
experiment	X-ray (resolution=2.49, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	7dvv_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7dvv_A interface=60,61,62,63,65,66,69,70,87, nplqkarilvnqlekyldryakeydvehlagpqghlvmhlykhpdkdmsikdaeeilhiSKSVaSNlvKRmekngfiaivpsktdkRvkylylthlgkqkatqfeifleklhstmlagitkeeirttkkvirtlaknma > 7dvv_B interface=61,62,63,64,66,67,70,71,88, enplqkarilvnqlekyldryakeydvehlagpqghlvmhlykhpdkdmsikdaeeilhiSKSVaSNlvKRmekngfiaivpsktdkRvkylylthlgkqkatqfeifleklhstmlagitkeeirttkkvirtlaknma
interface signature	SKSVSNKRR/SKSVSNKRR

Estimated binding specificities ?

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# IC=20.674 IC/col=1.034 n_of_columns=20

specificity:

A |  85   2  89   0   2   0   2   2   2  24   5   2  89   0  96  96   0   8  96   0
C |   2   2   3   0   3   0  89   3  85  24  77   6   2   0   0   0  96   8   0   0
G |   6   3   2  96   2   0   3   2   7  24   8  86   2   0   0   0   0  10   0   0
T |   3  89   2   0  89  96   2  89   2  24   6   2   3  96   0   0   0  70   0  96

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updated Sun Dec 17 01:44:53 2023