7dvv_AB : 3D-footprint complex

structure name	HEME SENSOR PROTEIN PEFR FROM STREPTOCOCCUS AGALACTIAE BOUND TO OPERATOR DNA (28-MER)
reference	Nishinaga et al. 'Commun 4 467 2021
source	Streptococcus agalactiae serotype III (strain NEM316) / Streptococcus agalactiae serotype III (strain NEM316) / Streptococcus agalactiae serotype III (strain NEM316) / Streptococcus agalactiae serotype III (strain NEM316)
experiment	X-ray (resolution=2.49, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	7dvv_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7dvv_A interface=60,61,62,63,65,66,69,70,87, nplqkarilvnqlekyldryakeydvehlagpqghlvmhlykhpdkdmsikdaeeilhiSKSVaSNlvKRmekngfiaivpsktdkRvkylylthlgkqkatqfeifleklhstmlagitkeeirttkkvirtlaknma > 7dvv_B interface=61,62,63,64,66,67,70,71,88, enplqkarilvnqlekyldryakeydvehlagpqghlvmhlykhpdkdmsikdaeeilhiSKSVaSNlvKRmekngfiaivpsktdkRvkylylthlgkqkatqfeifleklhstmlagitkeeirttkkvirtlaknma
interface signature	SKSVSNKRR/SKSVSNKRR

Estimated binding specificities ?

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# IC=21.448 IC/col=1.072 n_of_columns=20

specificity:

A |  96   0  76   0   0   0  96   0   8   9   9   5  94   0  96  90   0   4  90   5
C |   0   0   5   0   0   0   0   1  80   7   9   7   1   0   0   1  96   1   4   5
G |   0   0  10  96   0   0   0   1   3  72  11  74   1  96   0   4   0   1   1   3
T |   0  96   5   0  96  96   0  94   5   8  67  10   0   0   0   1   0  90   1  83

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updated Sun Dec 15 04:19:15 2024