| structure name | HEME SENSOR PROTEIN PEFR FROM STREPTOCOCCUS AGALACTIAE BOUND TO OPERATOR DNA (28-MER) (HTH marR-type domain-containing protein) |
| reference | Nishinaga et al. 'Commun 4 467 2021 |
| source | Streptococcus agalactiae serotype III (strain NEM316) / Streptococcus agalactiae serotype III (strain NEM316) |
| experiment | X-ray (resolution=2.49, R-factor=0.219) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | MarR family; |
| multimeric complexes | 7dvv_AB |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | SKSVSNKRR |
Estimated binding specificities ?
| contact |  |
A | 14 73 0 96 96 0 7 96 8 C | 14 7 0 0 0 96 14 0 0 G | 51 9 0 0 0 0 14 0 0 T | 17 7 96 0 0 0 61 0 88scan! |
Dendrogram of similar interfaces ?
matrix format------STKGSTVA--STNT----KTRC------RT------ L +7dvv_A +--------------3 --------RGSTRT--STHG--------------RA------ L ! +3zpl_B +--9 ------DCSA--TA--TT--------RT------RA------ L ! ! +1z9c_A +-11 +---------------2 --NT--KTPTQGSC--NTKA----------------RT---- ! ! +5bmz_B ! ! ----------------------------------RT------ +--13 +------------------3gfi_A ! ! ------DCLT--AG--TTRG------RG------RA------ L ! ! +5h3r_A +-14 +-------------------4 --------RGTCTA----RGNT------------RT------ L ! ! +4fx4_B ! ! ------STPTATAT--TTKG---------------------- L ! ! +----------------5yi2_J ! +------10 ------------------RC----YG----KT---------- +-17 +----------------2acj_B ! ! ----------QC------------------------------ ! ! +--------------5hso_A ! ! +---------6 ------HT--STAT--STRG---------------------- L ! ! ! +--------------5lej_A ! +-15 --TT------KATT--QTTG----LTRTKA--------FTYT L +-19 ! +---------2p7c_B ! ! ! +---------5 --------KTTC--KGTCHT--ST------------------ L ! ! +---12 +---------7ve5_B ! ! ! ------SGRGPT----SGRG---------------------- L ! ! +-------------------7bhy_A ! ! ------TCLA--TC--TTTT--------------RT------ L ! ! +--------------6jbx_A +-20 +-----------7 ------------------------YG---------------- ! ! +--------------3eyi_B ! ! --------------------RA-------------------- L ! ! +-------------------------4kdp_B ! ! ! YA----PTATPARA--YA------------------------ L ! ! +-16 +5bpd_A +-21 ! ! ! +--------------1 ------------------------YGRG-------------- ! ! ! ! +----------8 +4wcg_A ! ! +-18 ! ------------------RG----YG---------------- ! ! ! +--------------1qbj_C +-22 ! ! --ST--STQAQGST--SART------------KT-------- L ! ! ! +--------------------------5trd_B ! ! ! --FGNATTQGKGIG--VT----------------PC------ L -23 ! +----------------------------7bzg_B ! ! ------ST--PTTC----QG------RG-------------- L ! +----------------------------1f5t_A ! ------------------------YG---------------- +----------------------------1sfu_A |
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updated Tue Dec 19 18:02:44 2023