7e1b_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF VBRR-DNA COMPLEX
reference	Zhang et al. 'to ? ? ?
source	VIBRIO PARAHAEMOLYTICUS
experiment	X-ray (resolution=4.59, R-factor=?)
structural superfamily	CheY-like;C-terminal effector domain of the bipartite response regulators;
reference complex	7e1b_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7e1b_A interface=179,183,186,201, kqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlranadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgynttRtvdThvLqlrqklpgleietlRgvgykmka > 7e1b_B interface=178,179,182,183,185, mkqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlrnadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgyntRTvdTHvLqlrqklpgleietlrgvgykmka > 7e1b_C interface=179,183,186,201, kqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlranadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgynttRtvdThvLqlrqklpgleietlRgvgykmka > 7e1b_D interface=179,182,183,186, mkqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlrnadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgyntrTvdTHvlQlrqklpgleietlrgvgykmka
interface signature	RTLR/RTTHL/RTLR/TTHQ

Estimated binding specificities ?

readout + contact

# IC=13.391 IC/col=0.670 n_of_columns=20

specificity:

A |   3  85  24  24   0  24   3   0  96  85  24  24  24   0   0   3  87   5  24   6
C |  85   5  24  24   0  24  85   0   0   3  24  24  24   0   0  85   3  10  24  12
G |   5   3  24  24   0  24   5   0   0   3  24  24  24   0   0   3   3   3  24  75
T |   3   3  24  24  96  24   3  96   0   5  24  24  24  96  96   5   3  78  24   3

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updated Sun Dec 17 01:49:03 2023