7e1b_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF VBRR-DNA COMPLEX
reference	Zhang et al. 'to ? ? ?
source	VIBRIO PARAHAEMOLYTICUS
experiment	X-ray (resolution=4.59, R-factor=?)
structural superfamily	CheY-like;C-terminal effector domain of the bipartite response regulators;
reference complex	7e1b_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7e1b_A interface=179,183,186,201, kqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlranadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgynttRtvdThvLqlrqklpgleietlRgvgykmka > 7e1b_B interface=178,179,182,183,185, mkqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlrnadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgyntRTvdTHvLqlrqklpgleietlrgvgykmka > 7e1b_C interface=179,183,186,201, kqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlranadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgynttRtvdThvLqlrqklpgleietlRgvgykmka > 7e1b_D interface=179,182,183,186, mkqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlrnadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgyntrTvdTHvlQlrqklpgleietlrgvgykmka
interface signature	RTLR/RTTHL/RTLR/TTHQ

Estimated binding specificities ?

readout + contact

# IC=13.668 IC/col=0.683 n_of_columns=20

specificity:

A |   0  84  24  24   0  24   3   0  96  87  24  24  24   0   0   2  88  14  24   7
C |  92   3  24  24   0  24  92   0   0   3  24  24  24   0   0  88   0  13  24  14
G |   0   3  24  24   0  24   1   0   0   3  24  24  24   0   0   3   3   7  24  70
T |   4   6  24  24  96  24   0  96   0   3  24  24  24  96  96   3   5  62  24   5

scan!

home
updated Thu Jul 31 10:09:31 2025