7e1b_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF VBRR-DNA COMPLEX
reference	Zhang et al. 'to ? ? ?
source	VIBRIO PARAHAEMOLYTICUS
experiment	X-ray (resolution=4.59, R-factor=?)
structural superfamily	CheY-like;C-terminal effector domain of the bipartite response regulators;
reference complex	7e1b_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7e1b_A interface=179,183,186,201, kqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlranadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgynttRtvdThvLqlrqklpgleietlRgvgykmka > 7e1b_B interface=178,179,182,183,185, mkqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlrnadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgyntRTvdTHvLqlrqklpgleietlrgvgykmka > 7e1b_C interface=179,183,186,201, kqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlranadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgynttRtvdThvLqlrqklpgleietlRgvgykmka > 7e1b_D interface=179,182,183,186, mkqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlrnadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgyntrTvdTHvlQlrqklpgleietlrgvgykmka
interface signature	RTLR/RTTHL/RTLR/TTHQ

Estimated binding specificities ?

readout + contact

# IC=13.466 IC/col=0.673 n_of_columns=20

specificity:

A |   9  24  66   0   1  96  87  24  24  24   3   0  96   0  24  96  24  24   3   3
C |  66  24   9   0   3   0   3  24  24  24   3   0   0   0  24   0  24  24   4   3
G |   8  24   8   4  89   0   3  24  24  24   3   0   0  96  24   0  24  24   3  87
T |  13  24  13  92   3   0   3  24  24  24  87  96   0   0  24   0  24  24  86   3

scan!

home
updated Tue Jan 6 22:21:56 2026