7e1b_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF VBRR-DNA COMPLEX
reference	Zhang et al. 'to ? ? ?
source	VIBRIO PARAHAEMOLYTICUS
experiment	X-ray (resolution=4.59, R-factor=?)
structural superfamily	CheY-like;C-terminal effector domain of the bipartite response regulators;
reference complex	7e1b_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7e1b_A interface=179,183,186,201, kqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlranadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgynttRtvdThvLqlrqklpgleietlRgvgykmka > 7e1b_B interface=178,179,182,183,185, mkqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlrnadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgyntRTvdTHvLqlrqklpgleietlrgvgykmka > 7e1b_C interface=179,183,186,201, kqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlranadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgynttRtvdThvLqlrqklpgleietlRgvgykmka > 7e1b_D interface=179,182,183,186, mkqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlrnadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgyntrTvdTHvlQlrqklpgleietlrgvgykmka
interface signature	RTLR/RTTHL/RTLR/TTHQ

Estimated binding specificities ?

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# IC=13.272 IC/col=0.664 n_of_columns=20

specificity:

A |   3  86  24  24   0  24   3   0  96  89  24  24  24   0   0   3  86   6  24   6
C |  86   4  24  24   0  24  87   0   0   3  24  24  24   0   0  86   3  10  24  12
G |   3   3  24  24   0  24   3   0   0   0  24  24  24   0   0   3   3  12  24  69
T |   4   3  24  24  96  24   3  96   0   4  24  24  24  96  96   4   4  68  24   9

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updated Wed Sep 11 04:09:18 2024