7e1b_EFG : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF VBRR-DNA COMPLEX
reference	Zhang et al. 'to ? ? ?
source	VIBRIO PARAHAEMOLYTICUS
experiment	X-ray (resolution=4.59, R-factor=?)
structural superfamily	CheY-like;C-terminal effector domain of the bipartite response regulators;
reference complex	7e1b_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7e1b_E interface=179,183,186, mkqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlrnadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgynttRtvdThvLqlrqklpgleietlrgvgykmka > 7e1b_F interface=178,179,182,183,185,186,200, kqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlranadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgyntRTvdTHvLQlrqklpgleietlRgvgykmka > 7e1b_G interface=179,183,186,201, mkqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlrnadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgynttRtvdThvLqlrqklpgleietlRgvgykmka
interface signature	RTL/RTTHLQR/RTLR

Estimated binding specificities ?

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# IC=10.739 IC/col=0.671 n_of_columns=16

specificity:

A |   5   2   0  24  90  64  24  24  24   0   2  96  24  64  90   2
C |   2   1   0  24   2  14  24  24  24   0  17   0  24  11   2   5
G |   2   0   0  24   2   5  24  24  24   0   2   0  24   7   0   2
T |  87  93  96  24   2  13  24  24  24  96  75   0  24  14   4  87

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updated Sun Dec 17 01:48:35 2023