7e1b_EFG : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF VBRR-DNA COMPLEX
reference	Zhang et al. 'to ? ? ?
source	VIBRIO PARAHAEMOLYTICUS
experiment	X-ray (resolution=4.59, R-factor=?)
structural superfamily	CheY-like;C-terminal effector domain of the bipartite response regulators;
reference complex	7e1b_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7e1b_E interface=179,183,186, mkqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlrnadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgynttRtvdThvLqlrqklpgleietlrgvgykmka > 7e1b_F interface=178,179,182,183,185,186,200, kqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlranadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgyntRTvdTHvLQlrqklpgleietlRgvgykmka > 7e1b_G interface=179,183,186,201, mkqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlrnadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgynttRtvdThvLqlrqklpgleietlRgvgykmka
interface signature	RTL/RTTHLQR/RTLR

Estimated binding specificities ?

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# IC=11.868 IC/col=0.625 n_of_columns=19

specificity:

A |  87   2  11  24   0  76  96  24  24  24   5   5  24  96  94  90  24  24   4
C |   2   2   8  24   0  10   0  24  24  24   0   2  24   0   0   2  24  24   8
G |   2   2   5  24   0   2   0  24  24  24  12   2  24   0   0   0  24  24  11
T |   5  90  72  24  96   8   0  24  24  24  79  87  24   0   2   4  24  24  73

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updated Thu Jul 31 10:09:02 2025