7e1b_EFG : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF VBRR-DNA COMPLEX
reference	Zhang et al. 'to ? ? ?
source	VIBRIO PARAHAEMOLYTICUS
experiment	X-ray (resolution=4.59, R-factor=?)
structural superfamily	CheY-like;C-terminal effector domain of the bipartite response regulators;
reference complex	7e1b_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7e1b_E interface=179,183,186, mkqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlrnadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgynttRtvdThvLqlrqklpgleietlrgvgykmka > 7e1b_F interface=178,179,182,183,185,186,200, kqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlranadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgyntRTvdTHvLQlrqklpgleietlRgvgykmka > 7e1b_G interface=179,183,186,201, mkqtlllveddknladgllvsleqagyeclhveriadvepqwkkadlvildrqlpdgdsvqhlpewkkikdvpvilltalvtvkdkvagldsgandyltkpfaeaelfariraqlrnadkvmtkdleidratrevifkgdlitltrtefdlllflasnlgrvftrdelldhvwgynttRtvdThvLqlrqklpgleietlRgvgykmka
interface signature	RTL/RTTHLQR/RTLR

Estimated binding specificities ?

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# IC=11.856 IC/col=0.624 n_of_columns=19

specificity:

A |  89   0   6  24   0  65  96  24  24  24  12   3  24  96  96  86  24  24   1
C |   0   3   0  24   0  12   0  24  24  24  12   4  24   0   0   4  24  24  16
G |   4   1   6  24   0   3   0  24  24  24   6   3  24   0   0   3  24  24   3
T |   3  92  84  24  96  16   0  24  24  24  66  86  24   0   0   3  24  24  76

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updated Sun Dec 15 04:23:13 2024