7jm4_GH : 3D-footprint complex

structure name	IRF TRANSCRIPTION FACTOR
reference	Casarotto et al. 'Nucleic 49 2255 2021
source	Homo sapiens
experiment	X-ray (resolution=2.95, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	7oot_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7jm4_G interface=75,78,79,83, ngklrqwlidqidsgkypglvweneeksifripwkhagkqdynreedaalfkawalfkgkfregidkpdpptwkTrlRCalnKsndfeelversqldisdpykvyrivp > 7jm4_H interface=39,78,79,83, ngklrqwlidqidsgkypglvweneeksifripwkhagKqdynreedaalfkawalfkgkfregidkpdpptwktrlRCalnKsndfeelversqldisdpykvyriv
interface signature	TRCK/KRCK

Estimated binding specificities ?

readout + contact

# IC=11.069 IC/col=1.006 n_of_columns=11

specificity:

A |   6   0  82  84  82   0   0   4  82   0  91
C |   4   0   6   4   6  96  91   6   6   0   0
G |   4  96   4   4   4   0   4  82   4  96   1
T |  82   0   4   4   4   0   1   4   4   0   4

scan!

home
updated Wed Sep 11 06:12:03 2024