7jm4_GH : 3D-footprint complex

structure name	IRF TRANSCRIPTION FACTOR
reference	Casarotto et al. 'Nucleic 49 2255 2021
source	Homo sapiens
experiment	X-ray (resolution=2.95, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	7oot_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7jm4_G interface=75,78,79,83, ngklrqwlidqidsgkypglvweneeksifripwkhagkqdynreedaalfkawalfkgkfregidkpdpptwkTrlRCalnKsndfeelversqldisdpykvyrivp > 7jm4_H interface=39,78,79,83, ngklrqwlidqidsgkypglvweneeksifripwkhagKqdynreedaalfkawalfkgkfregidkpdpptwktrlRCalnKsndfeelversqldisdpykvyriv
interface signature	TRCK/KRCK

Estimated binding specificities ?

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# IC=10.914 IC/col=0.992 n_of_columns=11

specificity:

A |   0   1   4   4   1   0   4   4   4   0  82
C |   1  91   4  82   0   0   6   4   6  96   4
G |   4   0   4   6  91  96   4   4   4   0   4
T |  91   4  84   4   4   0  82  84  82   0   6

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updated Sun Dec 17 03:53:45 2023