7jm4_GH : 3D-footprint complex

structure name	IRF TRANSCRIPTION FACTOR
reference	Casarotto et al. 'Nucleic 49 2255 2021
source	Homo sapiens
experiment	X-ray (resolution=2.95, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	7oot_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7jm4_G interface=75,78,79,83, ngklrqwlidqidsgkypglvweneeksifripwkhagkqdynreedaalfkawalfkgkfregidkpdpptwkTrlRCalnKsndfeelversqldisdpykvyrivp > 7jm4_H interface=39,78,79,83, ngklrqwlidqidsgkypglvweneeksifripwkhagKqdynreedaalfkawalfkgkfregidkpdpptwktrlRCalnKsndfeelversqldisdpykvyriv
interface signature	TRCK/KRCK

Estimated binding specificities ?

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# IC=10.080 IC/col=1.008 n_of_columns=10

specificity:

A |  15   0  96   0   6   0  12   0  89   0
C |  12  90   0  96   1   0  19   0   0  96
G |  12   0   0   0  83  96  21   0   0   0
T |  57   6   0   0   6   0  44  96   7   0

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updated Sun Dec 15 06:34:12 2024