interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF HUMAN TRANSCRIPTION FACTOR ERF IN THE OXIDIZED FORM, IN COMPLEX WITH DOUBLE-STRANDED DNA ACCGGAAGTG
(ETS domain-containing transcription factor ERF)
referenceTsodikov et al. Biochemistry ? ? 2020
sourceHomo sapiens
experimentX-ray (resolution=4.51, R-factor=0.226)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyEtsdomain;
reference complex7jsa_J
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureDKRRY

Estimated binding specificities ?

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# IC=3.287 IC/col=0.657 n_of_columns=5 specificity:   
A |  16   6   7   0  10
C |  16   6  81  96  10
G |  16   6   4   0  63
T |  48  78   4   0  13
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updated Mon Dec 18 20:18:12 2023