7jsa_J : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF HUMAN TRANSCRIPTION FACTOR ERF IN THE REDUCED FORM, IN COMPLEX WITH DOUBLE-STRANDED DNA ACCGGAAGTG (ETS domain-containing transcription factor ERF)
reference	Tsodikov et al. Biochemistry ? ? 2020
source	Homo sapiens
experiment	X-ray (resolution=2.85, R-factor=0.248)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Etsdomain;
redundant complexes	7jsl_L
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7jsa_J interface=58,59,62,65,66, pgsrqiqlwhfilellrkeeyqgviawqgdygefvikdpdevarlwgvrkckpqmnyDKlsRalRYyynkrilhktkgkrftykfnfn
interface signature	DKRRY

Estimated binding specificities ?

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# IC=4.434 IC/col=0.887 n_of_columns=5

specificity:

A |  13   0   0  96  54
C |  54   0   0   0  13
G |  13  96  96   0  16
T |  16   0   0   0  13

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Dendrogram of similar interfaces ?

matrix format

  
  ----DCKT--RG----RGYA--KA   L                                    +5jvt_A    
                                             +--------------------1 
  ----DCKT--RGST--RGYA----   L       +-------2                    +4bnc_A    
                                     !       ! 
  --------RGNT--RGSTATRA--   L     +-3       +---------------------2o6g_G    
                                   ! ! 
  ----QCKT--RGAT--RGNT----   L   +-4 +-----------------------------8smh_F    
                                 ! ! 
  ----NCTTNA------VTNT----   L --5 +-----------------------------1pp7_U    
                                 ! 
  KTHG--------------------       +-----------------------------5hdn_C

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updated Sat Jan 10 15:17:32 2026