| structure name | CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF HUMAN TRANSCRIPTION FACTOR ERF IN THE REDUCED FORM, IN COMPLEX WITH DOUBLE-STRANDED DNA ACCGGAAGTG (ETS domain-containing transcription factor ERF) |
| reference | Tsodikov et al. Biochemistry ? ? 2020 |
| source | Homo sapiens |
| experiment | X-ray (resolution=2.85, R-factor=0.248) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | Etsdomain; |
| redundant complexes |  7jsl_L
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | DKRRY |
Estimated binding specificities ?
| contact |  |
A | 13 0 0 96 54 C | 54 0 0 0 13 G | 16 96 96 0 13 T | 13 0 0 0 16scan! |
Dendrogram of similar interfaces ?
matrix formatSG----------DCKT--RG--RGYA------------ L +3zp5_A +----------------1 --------------KT--RG--RGYA------------ L ! +3wts_C +-8 ------------DCKT--RG--RGYA----KA------ L ! ! +5jvt_A ! ! +---------3 ------------DCKT--RGATRCYA------------ L ! +-----6 +5e8i_D +-----10 ! --NC--------------TT--CT--NGKG-------- L ! ! +----------7rh2_B ! ! ------------DCKT--RGSTRGYC------------ L +--11 ! +------4uno_A ! ! +----------5 ------------------TT--CT--NGKG-------- L ! ! +------7oot_B ! ! ------------EAKT--RGATRGYA----------RT L ! +------------------------3jtg_A +-12 --------------KT--RGATRGYA------------ L ! ! +1bc8_C ! ! +----2 ------------DCKT--RG--RGYA------------ L ! ! +------------4 +1dux_F ! ! ! ! --------------STVT----RGQTNT--MT------ L -13 +----------9 +----5d5v_B ! ! --------------KT--RGSARGQA----------RA L ! ! +----------1yo5_C ! +------7 ----RGRTKG----------------------YGKC-- L ! +----------6lui_A ! ----------RT-------------------------- L +-----------------------------5vfx_A |
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updated Tue Dec 19 18:25:12 2023