7k78_E : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	ANTIBODY AND NUCLEOSOME COMPLEX (CSE4)
source	SACCHAROMYCES CEREVISIAE
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	7k78_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7k78_E interface=25,46, ytpselalyeirkyqrstdlliskIpfarlvkevtdefttkdqdlRwqsmaimalqeaseaylvgllehtnllalhakritimkkdmqlarrirgqfi

  
  ----IT--RA                                  +7k78_E    
                                +-------------2 
  --------RT               +----4             +7lya_E    
                           !    ! 
  --------RT             +-5    +--------------7wlr_E    
                         ! ! 
  --------RT             ! +-------------------7zs9_e    
                       +-6 
  --------RT           ! !                     +1u35_G    
                       ! !      +--------------1 
  --------RT       +---7 +------3              +7lyb_G    
                   !   !        ! 
  --------RA       !   !        +--------------6t7a_C    
                 --8   ! 
  RA--------       !   +----------------------7nky_e    
                   ! 
  --RAETRT--       +--------------------------4ne1_p

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updated Sat Sep 14 02:57:36 2024