7k78_E : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	ANTIBODY AND NUCLEOSOME COMPLEX (CSE4)
source	SACCHAROMYCES CEREVISIAE
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	7k78_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7k78_E interface=25,46, ytpselalyeirkyqrstdlliskIpfarlvkevtdefttkdqdlRwqsmaimalqeaseaylvgllehtnllalhakritimkkdmqlarrirgqfi

  
  --RT----                 +-----------------------------8grq_A    
                         +-4 
  LCRT----             +-5 +-----------------------------8hr1_E    
                       ! ! 
  ----RA--           +-6 +-----------------------------6g0l_D    
                     ! ! 
  --RG----         +-7 +-----------------------------8ox0_C    
                   ! ! 
  --RG----         ! +-----------------------------5x0y_G    
                   ! 
  --RG----       +-8                             +8txv_G    
                 ! !              +--------------1 
  --RA----       ! !         +----2              +1zla_C    
                 ! !         !    ! 
  --RG----     --9 +---------3    +--------------8jla_C    
                 !           ! 
  --RA--RA       !           +-------------------6a5l_g    
                 ! 
  --RT----       +-----------------------------8u14_G

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updated Wed Dec 18 09:28:51 2024