7ku7_AB : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF ROUS SARCOMA VIRUS CLEAVED SYNAPTIC COMPLEX (CSC) WITH HIV-1 INTEGRASE STRAND TRANSFER INHIBITOR MK-2048. CLUSTER IDENTIFIED BY 3-DIMENSIONAL VARIABILITY ANALYSIS IN CRYOSPARC.
source	ROUS SARCOMA VIRUS (STRAIN SCHMIDT-RUPPIN A) / ROUS SARCOMA VIRUS (STRAIN SCHMIDT-RUPPIN A) / ROUS SARCOMA VIRUS (STRAIN SCHMIDT-RUPPIN A) / ROUS SARCOMA VIRUS (STRAIN SCHMIDT-RUPPIN A)
experiment	NMR
structural superfamily	Ribonuclease H-like;DNA-binding domain of retroviral integrase;N-terminal Zn binding domain of HIV integrase;
reference complex	7jn3_E
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7ku7_A interface=51,151,154,157,158,161,203,244, plreakdlhtalhigpralskacnismqqarevvqtcphcnsapaleagvNprglgplqiwqtdftleprmaprswlavtvdtassaivvtqhgrvtsvavqhhwataiavlgrpkaiktdngscftskstrewlarwgiahttgipgnsQgqAmvERanRllkdkirvlaegdgfmkriptskqgellakamyalnhfergEntktpiqkhwrptvltegppvkirietgewekgwnvlvwgRgyaavknrdtdkviwvpsrkvkpdi > 7ku7_B interface= plqiwqtdftleprmaprswlavtvdtassaivvtqhgrvtsvavqhhwaTaiavlgrpkaiktdngscftskstrewlarwgiahttgipgnsqgqamveranrllkdkirvlaegdgfmkriptskqgellakamyalnhfergentkTpiQkhWRptVltegppvkirietgewekgwnvlvwgrgyaavknrdtdkviWvpsrkvkpdi
interface signature	NQAERRER/TTQWRVW

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# IC=5.766 IC/col=0.961 n_of_columns=6

A |  13   0   0   0   0  13
C |  13   0   0   0   0  16
G |  16  96   0   0  96  13
T |  54   0  96  96   0  54

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updated Wed Jan 7 02:10:53 2026