7lbw_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF TFAM (MITOCHONDRIAL TRANSCRIPTION FACTOR A) BRIDGING TWO NON-SEQUENCE SPECIFIC DNA SUBSTRATES
reference	Garcia-Diaz et al. 'Nucleic 50 322 2022
source	Homo sapiens
experiment	X-ray (resolution=2.84, R-factor=?)
structural superfamily	HMG-box;
reference complex	7lbx_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7lbw_A interface=12,14,15,18,19,22,34,35,38,100,104,114,119,120,123,127,135,136,139,191, svlascpkkpvSsYLrfSKeqLpifkaqnpdakTTelIrriaqrwrelpdskkkiyqdayraewqvykeeisrfkeqltpsqimslekeimdkhlkrkaMtkkKeltllgkpkRprsaYNvyVaerFqeakgdsPQekLktvkenwknlsdsekelyiqhakedetryhnemksweeqmievgrkdllrrTik > 7lbw_B interface=12,14,15,18,22,34,35,38,100,104,114,119,120,123,127,135,136,139, svlascpkkpvSsYLrfSkeqLpifkaqnpdakTTelIrriaqrwrelpdskkkiyqdayraewqvykeeisrfkeqltpsqimslekeimdkhlkrkaMtkkKeltllgkpkRprsaYNvyVaerFqeakgdsPQekLktvkenwknlsdsekelyiqhakedetryhnemksweeqmievgrkdllrr
interface signature	SYLSKLTTIMKRYNVFPQLT/SYLSLTTIMKRYNVFPQL

Estimated binding specificities ?

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# IC=27.956 IC/col=0.736 n_of_columns=38

specificity:

A |   0   0   0   0  24   7   1  24  24  24  74   0   0   0   0  24  24  24  24   4  11  67  24   0  96   0   0   9  24  77  24  95  24  24  96  96   0   0
C |  96  96   0   0  24  72   1  24  24  24   8   0  96   0  96  24  24  24  24  90  11   9  24   0   0   0  96   6  24   7  24   0  24  24   0   0   0   0
G |   0   0   0   0  24  12   4  24  24  24   7  96   0   0   0  24  24  24  24   1   9   9  24  96   0  96   0   7  24   7  24   0  24  24   0   0  96  96
T |   0   0  96  96  24   5  90  24  24  24   7   0   0  96   0  24  24  24  24   1  65  11  24   0   0   0   0  74  24   5  24   1  24  24   0   0   0   0

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updated Wed Sep 11 07:14:48 2024