7lbw_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF TFAM (MITOCHONDRIAL TRANSCRIPTION FACTOR A) BRIDGING TWO NON-SEQUENCE SPECIFIC DNA SUBSTRATES
reference	Garcia-Diaz et al. 'Nucleic 50 322 2022
source	Homo sapiens
experiment	X-ray (resolution=2.84, R-factor=?)
structural superfamily	HMG-box;
reference complex	7lbx_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7lbw_A interface=12,14,15,18,19,22,34,35,38,100,104,114,119,120,123,127,135,136,139,191, svlascpkkpvSsYLrfSKeqLpifkaqnpdakTTelIrriaqrwrelpdskkkiyqdayraewqvykeeisrfkeqltpsqimslekeimdkhlkrkaMtkkKeltllgkpkRprsaYNvyVaerFqeakgdsPQekLktvkenwknlsdsekelyiqhakedetryhnemksweeqmievgrkdllrrTik > 7lbw_B interface=12,14,15,18,22,34,35,38,100,104,114,119,120,123,127,135,136,139, svlascpkkpvSsYLrfSkeqLpifkaqnpdakTTelIrriaqrwrelpdskkkiyqdayraewqvykeeisrfkeqltpsqimslekeimdkhlkrkaMtkkKeltllgkpkRprsaYNvyVaerFqeakgdsPQekLktvkenwknlsdsekelyiqhakedetryhnemksweeqmievgrkdllrr
interface signature	SYLSKLTTIMKRYNVFPQLT/SYLSLTTIMKRYNVFPQL

Estimated binding specificities ?

readout + contact

# IC=24.049 IC/col=0.587 n_of_columns=41

specificity:

A |   0   0   0   1  24  24   0  24  24  24  24   0   0   0   1  24  24  24  11  24  24  24  24   1  96   0   0  24  24  24  24  65  24  24  90  96   0   1  24   1  82
C |  94  96   0   1  24  24   0  24  24  24  24   1  96   0  93  24  24  24   9  24  24  24  24   4   0   0  94  24  24  24  24   7  24  24   1   0   0   1  24   4   4
G |   2   0   0   1  24  24   0  24  24  24  24  94   0   0   1  24  24  24  63  24  24  24  24  90   0  96   2  24  24  24  24  13  24  24   4   0  96  93  24   1   9
T |   0   0  96  93  24  24  96  24  24  24  24   1   0  96   1  24  24  24  13  24  24  24  24   1   0   0   0  24  24  24  24  11  24  24   1   0   0   1  24  90   1

scan!

home
updated Sun Dec 15 07:41:14 2024