7lvv_BD : 3D-footprint complex

structure name	CRYOEM STRUCTURE DRDV-DNA COMPLEX
source	DEINOCOCCUS WULUMUQIENSIS
experiment	NMR
structural superfamily	S-adenosyl-L-methionine-dependent methyltransferases;
reference complex	7lvv_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7lvv_B interface=303,439,441,442,476,477,479,538,539,545,553,555,557,558,651,656,703,704,744,745,747,785,786,790, slqlvkkfqkrledivayggtrnessvraafqqllsdwaegsglrlitevtqkavagnnvrpdgtlkdslqqsrgyweskdeadtlddeiqkklakgyprdniifedsrlavlmqngeevqrvdmgdagalagllklffefeppqvlefrkavdhfkdemphllkilreaadaaeqkadyrgerdhfveiakeainpdfsprdaremliqhiltgdlftsvfdnaqyhednniaqqlqqlaatfykgpvkrdiaertkryygaiqaaaaqiadhhekqrflkalyenfyraynpagaerlgiFytpgeivrfmieatdtllekhfqkeladkgveildpatgtgtfitelidflpkakleqkyreelhcnelallpyyianlnieatyaqkmgryeefrnivlvdtldntgglfgsvtaenlerakrqnarpvrviigNpPYranqanendnnknreykeidrrikatyvaastaQKtKlydmysrflrwatdrlkedgivafvsnssfidsrtfdgfrkevvkdfdhiyildmkgnANtsgerRkreggnvFnDqIKvgvavyflvrsdtkiwyhavpdfwrareklewlkttkfediefdhirpdakhnwlgqvdeendwneflpvadkdtkqakglgqeraifklysLgvvtNrdewvysraedeladkvryfigryneiiklplgdlmsrnwegdikmTRatiadaqsrksysleknsivpslyrpfdvlkmyfsknlnEMqYqmpsifpkgvgenvvialsgspaakpfqvlatdilpsLDlleKtqclpfyrytmngerlnnitdyalkafqthyadtsisredifhyvyavlhhpayrekyalnlrqefpripfypefgrwaawgrelmalhigfesvapyplkrtdeppkndtpealalakkarlkvqrdaakqptgaveldglttlagipaaawayklgnrsalewvlerhkettpkdatirekfntyrfadhkervidllarvttvsvetvrivgempaetm > 7lvv_D interface=61, slqlvkkfqkrledivayggtrnessvraafqqllsdwaegsglrlitevtqkavagnnvRpdgtlkdslqqsrgyweskdeadtlddeiqkklakgyprdniifedsrlavlmqngeevqrvdmgdagalagllklffefeppqv
interface signature	FNPYQKKANRFDIKLNTREMYLDK/R

Estimated binding specificities ?

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# IC=10.183 IC/col=1.131 n_of_columns=9

specificity:

A |  19   0   0   0   0  96   0   0   0
C |  19   0   0  96  96   0   0   0  19
G |  38  96   0   0   0   0   0  96  76
T |  20   0  96   0   0   0  96   0   1

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updated Sun Dec 15 08:06:53 2024