interface graph thumbnail
legend  pdf

structure nameRNA POLYMERASE II INITIALLY TRANSCRIBING COMPLEX (ITC)
sourceSACCHAROMYCES CEREVISIAE
experimentNMR
structural superfamilyTranscription factor IIA TFIIA, beta-barrel domain;Transcription factor IIA TFIIA, alpha-helical domain;"Winged helix" DNA-binding domain;Zinc beta-ribbon;
reference complex5oqj_U 5oqj_X 7ml0_W
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureK/NVFLFTNVFPLFVT/K

Estimated binding specificities ?

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# IC=6.711 IC/col=0.959 n_of_columns=7 specificity:   
A |  96   0  96   0  69  69  67
C |   0   0   0   0   9   9   9
G |   0   0   0   0   9   9  11
T |   0  96   0  96   9   9   9
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updated Sun Dec 15 09:23:33 2024