3D-footprint cannot reliably estimate the specificity of 'beta and beta-prime subunits of DNA dependent RNA-polymerases', as these often contain single-stranded DNA molecules which accumulate many base contacts which distort the calculations.

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updated Wed Dec 18 10:01:02 2024

structure name	RNA POLYMERASE II PRE-INITIATION COMPLEX WITH CLOSED PROMOTER DNA IN PROXIMAL POSITION
experiment	NMR
structural superfamily	beta and beta-prime subunits of DNA dependent RNA-polymerase;
sequence family	RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2, domain 7; RNA polymerase Rpb2, domain 4; RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 5;
multimeric complexes	7nvy_7AMORU 7nvy_BE 7nw0_7ABEMORU 7ycx_124j 8gxq_ABCDEFGHPQs 8gxs_ABCDEFGHPQ
redundant complexes	7nw0 7ycx 8bvw 8byq 8gxq 8gxs
links to other resources	NAKB PDIdb DNAproDB