3D-footprint cannot reliably estimate the specificity of 'beta and beta-prime subunits of DNA dependent RNA-polymerases', as these often contain single-stranded DNA molecules which accumulate many base contacts which distort the calculations.


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updated Wed Sep 11 09:45:22 2024
structure nameRNA POLYMERASE II PRE-INITIATION COMPLEX WITH CLOSED PROMOTER DNA IN PROXIMAL POSITION
sourceSUS SCROFA
experimentNMR
structural superfamilyCyclin-like;Zinc beta-ribbon;Transcription factor IIA TFIIA, beta-barrel domain;Transcription factor IIA TFIIA, alpha-helical domain;TATA-box binding protein-like;Rap30/74 interaction domains;"Winged helix" DNA-binding domain;beta and beta-prime subunits of DNA dependent RNA-polymerase;Eukaryotic RPB5 N-terminal domain;RPB5-like RNA polymerase subunit;
reference complex5iy6_M 5iy6_N 5iy6_P 5iy6_T 7nvy_B 7nvy_E
links to other resourcesNAKB PDBSum PDIdb DNAproDB