7oar_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF HELICASE PIF1 FROM THERMUS OSHIMAI IN COMPLEX WITH PARALLEL G-QUADRUPLEX
reference	Chen et al. 'Embo 23 e53874 2022
source	Thermus oshimai
experiment	X-ray (resolution=2.58, R-factor=?)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
reference complex	6s3h_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7oar_A interface=66,73,151,153,238,262,290,293,299,327,329,330,331,354,367,386, eglsseqqraflavtqtphpahlitgpagtgkttllyalqkfykgravtlaptgtaalqargqtvHsffrfpArllryrhpedirppgphsplrkaieqmevlildevgmvrvdlleamdwalrktrkrleepfggvkvlllgdtrqlepVvPggeealyiartwggpfffqahvweevalrvhrlwesqrqredplfaellkrlrqgdpqaletlnraavrpdggeepgtliltprRkeadalnlkrlealpgkpleyqaQvkgefaetdfpteaaltlkkgaqvillRndPlgeyfNgdlgwvedleaealavrlkrngrrvviRpFVWekivytydsereeikpqvvgtfRqvpvrlawaltvHkaqgltldkvhlelgrglFahgqlyvaltrvrrlqdlslsrpiaptellwrpevevfetriqegiwqkshgwpsl > 7oar_B interface=66,73,151,153,237,238,344,360,363, eglsseqqraflavtqtphpahlitgpagtgkttllyalqkfykgravtlaptgtaalqargqtvHsffrfpArllryrhpedirppgphsplrkaieqmevlildevgmvrvdlleamdwalrktrkrleepfggvkvlllgdtrqlepVvPggeealyiartwggpfffqahvweevalrvhrlwesqrqredplfaellkrlrqgdpqaletlnraavrpdggeepgtliltpRRkeadalnlkrlealpgkpleyqaqvkgefaetdfpteaaltlkkgaqvillrndplgeyfngdlgwvedleaealavrlkrngrrvvirpfvrqvpvrlawaltvHkaqgltldkvhlelgRglFahgqlyvaltrvrrlqdlslsrpiaptellwrpevevfetriqegiwqks
interface signature	HAVPRQRPNRFVWRHF/HAVPRRHRF

Estimated binding specificities ?

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# IC=20.465 IC/col=0.758 n_of_columns=27

specificity:

A |  13   0   0   0   0   0   0  24   0  24   0  24  24  24   0  24  24  24   0  24  24   0   0   0   0   0  16
C |  13   0   0   0   0   0   0  24   0  24   0  24  24  24   0  24  24  24   0  24  24   0   0   0   0   0  13
G |  13   0   0   0   0   0  96  24  96  24  96  24  24  24  96  24  24  24  96  24  24   0   0   0   0   0  13
T |  57  96  96  96  96  96   0  24   0  24   0  24  24  24   0  24  24  24   0  24  24  96  96  96  96  96  54

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updated Sun Dec 15 11:30:44 2024